View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12513_low_5 (Length: 598)
Name: NF12513_low_5
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 17 - 587
Target Start/End: Original strand, 41510379 - 41510950
Alignment:
| Q |
17 |
actttgtgttgcttcccttaatagcaaaagcccacattatcccaataatagacatagcaaaactcttagcacaacgtggtgttattgttaccatattcac |
116 |
Q |
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|||||||||| |||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41510379 |
actttgtgttatttcctttaatagcacaaggccacattatcccaatgatagacatagcaaaactcttagcacaacgtggtgttattgttacaatattcac |
41510478 |
T |
|
| Q |
117 |
tacaccaaaaaatgcttcacgttttacttcagttctttctcgtgctatttattctggccttcaaatcaaaattgtaaccctaaatttttcatcaaaacaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41510479 |
aacaccaaaaaatgcttcacgttttacttcagttctttctcgtgctgtttcttctggccttcaaatcaaaattgtaaccctaaattttccatcaaaacaa |
41510578 |
T |
|
| Q |
217 |
gttggattaccagatggttgcgagaatttcgacatggtgaacatttcaaaagacatgaatatgatgtacaatctattccatgcagtttccttgcttcaaa |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41510579 |
gttggattaccagacggttgcgagaatttcgacatggtgaacatttcaaaagacatgaatatgaagtacaatctattccatgcagtttccttgcttcaaa |
41510678 |
T |
|
| Q |
317 |
aggaaggtgaagatttgtttgataaattgtcacc-aaacccaagttgctttatctctgatttttgcataacttggacttctcaaatagctgaaaaacatc |
415 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41510679 |
aggaaggtgaagatttgtttgataaattgtcaccaaaacccaagttgcattatctctgatttttgcataacttggacttctcaaatagctgaaaaacatc |
41510778 |
T |
|
| Q |
416 |
acattccaaggatttcattccatggtttttgttgtttcaccctccattgcatgttcaaggtacacacttcaaatattcttgaaagcatcaattcagacac |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41510779 |
acattccaaggatttcattccatggtttttgttgtttcaccctccattgcatgttcaaggtacacacttcaaatattcttgaaagcatcaattcagagac |
41510878 |
T |
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| Q |
516 |
agagtttttctctattcctggcatacctgacaaaattcaagtcacaaaagaacagataccaggaacagtgaa |
587 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41510879 |
agagtttttctctattcctggcatacctgacaaaattcaagtcacaaaagaacagataccaggaacagtgaa |
41510950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 41520075 - 41520349
Alignment:
| Q |
17 |
actttgtgttgcttcccttaatagcaaaagcccacattatcccaataatagacatagcaaaactcttagcacaacgtggtgttattgttaccatattcac |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41520075 |
actttgtgttgcttcccttaatagcaaaagcccacattatccccataatagacatagcaaaactcttagcacaacgtggtgttactgttaccatattcac |
41520174 |
T |
|
| Q |
117 |
tacaccaaaaaatgcttcacgttttacttcagttctttctcgtgctatttattctggccttcaaatcaaaattgtaaccctaaatttttcatcaaaacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41520175 |
tacaccaaaaaatgcttcacgttttacttcagttctttctcgtgctgtttcttctggccttcaaatcaaaattgtaaccctaaatttttcatcaaaacaa |
41520274 |
T |
|
| Q |
217 |
gttggattaccagatggttgcgagaatttcgacatggtgaacatttcaaaagacatgaatatgatgtacaatcta |
291 |
Q |
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| T |
41520275 |
gttggattaccagatggttgcgagaatttcgacatggtgaacatttcaaaagacatgaatatgatgtacaatcta |
41520349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 314 - 587
Target Start/End: Original strand, 41520349 - 41520622
Alignment:
| Q |
314 |
aaaaggaaggtgaagatttgtttgataaattgtcaccaaacccaagttgctttatctctgatttttgcataacttggacttctcaaatagctgaaaaaca |
413 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41520349 |
aaaaggaaggtgaagatttgtttgataaattgtcgccaaaaccaagttgcattatctctgatttttgcataacttggacttctcaaatagctgagaaaca |
41520448 |
T |
|
| Q |
414 |
tcacattccaaggatttcattccatggtttttgttgtttcaccctccattgcatgttcaaggtacacacttcaaatattcttgaaagcatcaattcagac |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41520449 |
tcacattccaaggatttcattccatggtttttgttgtttcaccctccattgcatgttcaaggtacacacttcaaatattcttgaaaacatcaattcagag |
41520548 |
T |
|
| Q |
514 |
acagagtttttctctattcctggcatacctgacaaaattcaagtcacaaaagaacagataccaggaacagtgaa |
587 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41520549 |
acagagtttttctctattcctggcatacctgacaaaattcaagtcacaaaagaacagataacaggaacagtgaa |
41520622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 29 - 580
Target Start/End: Original strand, 48531758 - 48532300
Alignment:
| Q |
29 |
ttcccttaatagcaaaagcccacattatcccaataatagacatagcaaaactcttagcacaacgtggtgttattgttaccatattcactacaccaaaaaa |
128 |
Q |
| |
|
|||||||||||||| ||| |||||||| || || |||||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48531758 |
ttcccttaatagcacaaggacacattatacctatgatagacattgctaaactgttagcacaacgtggtgttattgttaccatatttactacaccaaaaaa |
48531857 |
T |
|
| Q |
129 |
tgcttcacgttttacttcagttctttctcgtgctatttattctggccttcaaatcaaaattgtaaccctaaatttttcatcaaaacaagttggattacca |
228 |
Q |
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||| |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||| || |||||| || ||||||||| || |||||| |
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| T |
48531858 |
tgcatcacgttttacttcagttctttctcgtgctgtttcttctggcctccaaatcaaaatagtaacactcaattttccaacaaaacaagcagggttacca |
48531957 |
T |
|
| Q |
229 |
gatggttgcgagaatttcgacatggtgaacatttcaaaagacatgaatatgatgtacaatctattccatgcagtttccttgcttcaaaaggaaggtgaag |
328 |
Q |
| |
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|| || || |||||||| ||||||||| | ||||| |||||||| ||| ||||| ||||||||| | ||||||| ||||| || ||||| |
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| T |
48531958 |
gaagggtgtgagaattttgacatggtgga---ttcaatagacatgagaatg------aatctcttccatgcaatcaccttgctccaaaaaccagctgaag |
48532048 |
T |
|
| Q |
329 |
atttgtttgataaattgtcaccaaacccaagttgctttatctctgatttttgcataacttggacttctcaaatagctgaaaaacatcacattccaaggat |
428 |
Q |
| |
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| ||||||||| |||| ||||||| ||||||||| | ||||||||||||| ||| |||||||| ||||||||||||||| ||| | ||||||||||| |
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| T |
48532049 |
aattgtttgatgcattgacaccaaaaccaagttgcataatctctgattttttcattccttggactattcaaatagctgaaaaccataaaattccaaggat |
48532148 |
T |
|
| Q |
429 |
ttcattccatggtttttgttgtttcaccctccattgcatgttcaaggtacacacttcaaatattcttgaaagcatcaattcagacacagagtttttctct |
528 |
Q |
| |
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|||||||||||| |||| ||| ||| |||||||||||| ||||| |||| |||||||| ||||||||||| || ||||||| | |||| ||| || |
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| T |
48532149 |
ttcattccatgggttttcttgcttctgtctccattgcatgctcaagatacaaacttcaaagattcttgaaagagtcgattcagaatctgagtattttact |
48532248 |
T |
|
| Q |
529 |
attcctggcatacctgacaaaattcaagtcacaaaagaacagataccaggaa |
580 |
Q |
| |
|
| || |||||||||||| ||||||||||||| ||||| ||||||||||||| |
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|
| T |
48532249 |
gtgcccggcatacctgaccaaattcaagtcaccaaagagcagataccaggaa |
48532300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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