View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12513_low_9 (Length: 507)
Name: NF12513_low_9
Description: NF12513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12513_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 21 - 492
Target Start/End: Original strand, 46817141 - 46817613
Alignment:
| Q |
21 |
caggcatgttacaagcacgggggagagagatagccaaggttctattgattggaattttgaagggaacacttgcagttacaaggagacacaaacaattcat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46817141 |
caggcatgttacaagcacgggggagagagatagccaaggttctattgattggaattttgaagggaacacttgcagttacaaggagacacaaacaattcat |
46817240 |
T |
|
| Q |
121 |
gccactacttgttagggacttaagagcaccacaacattcagtggttggtgaggtgccattagcactactacctgtaagaaaacccatacaaggtgtgaag |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46817241 |
gccactacttgttagggacttaagagcaccacaacattcagtggttggtgaggtgccattagcactactacctgtaagaaaacccatacaaggtgtgaag |
46817340 |
T |
|
| Q |
221 |
agagtgcttattgtagaaggattacatggggtgttgatttgtgcattggctggtccagccatgacaatattaatgaccaatattatagctaggtgacata |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46817341 |
agagtgcttattgtagaaggattacatggggtgttgatttgtgcattggctggtccagccatgacaatattaatgaccaatattatagctaggtgacata |
46817440 |
T |
|
| Q |
321 |
aagcaacataatttgccatgtctaattgtgtactaggaatttgtactttggtagaatcaagagaagttgtaaaattgggtttggaattggaagtgttaag |
420 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46817441 |
aagcaacagaatttgccatgtctaattgtgtactaggaatttgtacttttgtagaatcaagagaagttgtaaaattgggtttggaattggaagtgttaag |
46817540 |
T |
|
| Q |
421 |
gttgtgttagaacaggaagatgaaaaggggatttatagatagaagacattgat-aaaagaagtgaagattatt |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46817541 |
gttgtgttagaacaggaagatgaaaaggggatttatagatagaagacattgataaaaagaagtgaagattatt |
46817613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 1142551 - 1142602
Alignment:
| Q |
21 |
caggcatgttacaagcacgggggagagagatagccaaggttctattgattgg |
72 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
1142551 |
caggcaagttacaagcacgaggaagagagatagctaaggttctattgattgg |
1142602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University