View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12514_high_5 (Length: 239)
Name: NF12514_high_5
Description: NF12514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12514_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 40998696 - 40998476
Alignment:
| Q |
19 |
gtcattgagataaatttctcatctctagatgtgatttccagatttcaatcattattatacccaaacagagcgtaagtagtggagccaattatataatctt |
118 |
Q |
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| T |
40998696 |
gtcattgagataaatttctcatctctagatgtgatttccagatttcaatcattattatacccaaacagagcgtaagtagtggagccaattatataatctt |
40998597 |
T |
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| Q |
119 |
ttgtgtaaattgatctgtctactcaaactatatttgctagatgcccaaaccaccaataggggtgtgttgtgtataattataaaaaggttaaaatgtgttt |
218 |
Q |
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| T |
40998596 |
ttgtgtaaattgatctgtctactcaaactatatttgctagatgcccaaaccaccaataggggtgcgttctgtataattataaaaaggttaaaatgtgttt |
40998497 |
T |
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| Q |
219 |
ttcgtccatacaaatatgatg |
239 |
Q |
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| T |
40998496 |
ttggtccttacaaatatgatg |
40998476 |
T |
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