View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12514_low_2 (Length: 464)
Name: NF12514_low_2
Description: NF12514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12514_low_2 |
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| [»] scaffold0143 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 33518243 - 33518692
Alignment:
| Q |
1 |
acaaaatagaatcaaacaattcctgaacaaaaggaaaagaaacgagtcaaccaaacgtattgaaccttttctttgttattaggtattttnnnnnnntggc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
33518243 |
acaaaatagaatcaaacaattcctgaacaagaggaaaagaaacgagtcaaccaaacgtattgaaccttttttttgttattaggtatttaaaaaaaaaggc |
33518342 |
T |
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| Q |
101 |
tcatgtattcatttatgagttcaaatagtgnnnnnnnnncctttgtaaaattcttgtaaagtgataatagatatatcaagaatacatcttagtaatggaa |
200 |
Q |
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| T |
33518343 |
tcatgtattcatttatgagttcaaatagtgttttttttttctttgtaaaattcttgtagagtgataatagatatatcaagaatacatcttagtaatgga- |
33518441 |
T |
|
| Q |
201 |
gaatattcaaagtatatacataaggt-atcttatttagaggttgatccagacatcatgctctaaaagggagaaaaacacagcatttaataattaaacaag |
299 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33518442 |
gaatattcaaagtatatacacaaggtgatcttatttagaggttgatccagacatcatgctctaaaagggagaaaaacacagcatttaataattaaacaag |
33518541 |
T |
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| Q |
300 |
tttaacacaattaatacaagtagaactattcaattgctttgttcattactagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33518542 |
tttaacacaattaatacaagtagaactattcaattgctttgttcattactagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtc |
33518641 |
T |
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| Q |
400 |
ttccaaaatccttgatccaaaaatatactatatgttttggatgaagatgtg |
450 |
Q |
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| T |
33518642 |
ttccaaaatccttgatccaaaaatatactatatgttttggatgaagatgtg |
33518692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0143 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0143
Description:
Target: scaffold0143; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 349 - 450
Target Start/End: Original strand, 2 - 103
Alignment:
| Q |
349 |
tagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatg |
448 |
Q |
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| T |
2 |
tagagttagtcctccaaaatccttgatccaaacatagacctaaattttgtcttccaaaatccttgatccaaaaatatactatatgttttggatgaagatg |
101 |
T |
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| Q |
449 |
tg |
450 |
Q |
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| T |
102 |
tg |
103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 342
Target Start/End: Original strand, 55447265 - 55447448
Alignment:
| Q |
160 |
agtgataatagatatatcaagaatacatcttagtaatggaagaatattcaaagtatatacataaggt-atcttatttagaggttgatccagacatcatgc |
258 |
Q |
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||||||||||| ||||||||| |||| ||||| |||||||||||||||||||| |||| | ||||| |||||| | |||||||||||| ||||| | |
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| T |
55447265 |
agtgataataggtatatcaagtatacttcttaaaaatggaagaatattcaaagtttatatacaaggtggccttattca-aggttgatccaggcatcacgg |
55447363 |
T |
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| Q |
259 |
tctaaaagggagaaaaacacagcat-ttaataattaaacaagtttaacacaattaatacaagtagaactattcaattgctttgtt |
342 |
Q |
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|||| |||||| |||||| || | |||||||||||| || |||| |||||| ||| || ||||||||||||| |||| |||| |
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| T |
55447364 |
tctagaagggataaaaactcaaagtattaataattaaataattttataacaattcataaaaatagaactattcaactgctatgtt |
55447448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 55447157 - 55447217
Alignment:
| Q |
1 |
acaaaatagaatcaaacaattcctgaacaaaaggaaaagaaacgagtcaaccaaacgtatt |
61 |
Q |
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| T |
55447157 |
acaaaatagaatcaaacaattcctaaagaagaggatacgaaatgaatcaaccaaatgtatt |
55447217 |
T |
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