View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12514_low_4 (Length: 318)
Name: NF12514_low_4
Description: NF12514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12514_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 27506568 - 27506263
Alignment:
| Q |
8 |
aagcagagatcacaaaaatttagaagaatctaactaatactttaggataccaatgacttgtgttgtgtttgacgcctatttgtaagtatatttatagtta |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27506568 |
aagcaaagatcacaaaaatttagaagaatctaactaatactttaggataccaatgacttgtgttgtgtttgatgcctatttgtaagtatatttatagtta |
27506469 |
T |
|
| Q |
108 |
ctaatattctttgcaaacctaattccaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtgggttgtctaaagattgtacacca |
207 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27506468 |
ctaatattctttgcaaacctaattccaagataaattattgtttgaaagaattaaaggataagatgatatagcatgtgggttgtctaaagattgtacacca |
27506369 |
T |
|
| Q |
208 |
ccctttcaaattcaacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctga |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27506368 |
ccctttcaaattcaacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctga |
27506269 |
T |
|
| Q |
308 |
tgtcca |
313 |
Q |
| |
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|||||| |
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| T |
27506268 |
tgtcca |
27506263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 27486227 - 27486524
Alignment:
| Q |
21 |
aaaaatttagaagaatctaactaatactttaggataccaatgacttgtgttgtgtttgacgcctatttgtaagtatatttatagttactaatattctttg |
120 |
Q |
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|||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||| |
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| T |
27486227 |
aaaaatttagaagaatgtaactaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttg |
27486326 |
T |
|
| Q |
121 |
caaacctaattccaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtgg-gttgtctaaagattgta-caccaccctttcaaat |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| ||| || |||||||||||||||| |
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| T |
27486327 |
caaacctaattccaagctaaattatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattataccaccaccctttcaaat |
27486426 |
T |
|
| Q |
219 |
tcaacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtccatct |
316 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |
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| T |
27486427 |
tcaacctcatattttttcatccattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtccatct |
27486524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 27479167 - 27479461
Alignment:
| Q |
21 |
aaaaatttagaagaatctaactaatactttaggataccaatgacttgtgttgtgtttgacgcctatttgtaagtatatttatagttactaatattctttg |
120 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||| |
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| T |
27479167 |
aaaaatttagaagaatgtaactaatacttgaggatgtcaacgacttgtgttgtgtttgaagccaatttgtaagtatatttatagttactgagattctttg |
27479266 |
T |
|
| Q |
121 |
caaacctaattccaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtgg-gttgtctaaagattgta-caccaccctttcaaat |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||| | |
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| T |
27479267 |
caaacctaattccaagctaaattatttcttgaaagagttaaaggataagatgatataccatgtggtgttgtctaaacattgtaccaccaccctttcaagt |
27479366 |
T |
|
| Q |
219 |
tcaacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
313 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
27479367 |
tcaacctcatattttatcatctattaactatcacttcataattgtgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtcca |
27479461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 284
Target Start/End: Complemental strand, 27501137 - 27500939
Alignment:
| Q |
87 |
ttgtaagtatatttatagttactaatattctttgcaaacctaattccaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtgg- |
185 |
Q |
| |
|
|||| |||||||||||||||| | | ||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27501137 |
ttgttagtatatttatagttattgaggttctttggaaacccaattacaagctaaattattgtttgaaagagttaaaggataagatgatatagcatgtggt |
27501038 |
T |
|
| Q |
186 |
gttgtctaaagattgtacaccaccctttcaaattcaacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgt |
284 |
Q |
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||||| | |||||||||| |||||||||||| | ||||| | |||||||||||||||||| | ||||||||||| ||||| |||||||||||||||| |
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| T |
27501037 |
gttgttttaagattgtaccccaccctttcaactgcaaccacttatttgttcatgcattaagaagtacttcataattgtgtaagcatgtttcagacatgt |
27500939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 27526958 - 27526881
Alignment:
| Q |
87 |
ttgtaagtatatttatagttactaatattctttgcaaacctaattccaagctaaattattgtttgaaagagttaaagg |
164 |
Q |
| |
|
||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27526958 |
ttgtaagtatatttatagttactgaggttctctggaaacctaattccaagctaaattattgtttaaaagagttaaagg |
27526881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 27468898 - 27468943
Alignment:
| Q |
251 |
acttcataattttgtaaacatgtttcagacatgtcttcttcattat |
296 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
27468898 |
acttcataattttgtaaacatgcttcagacatgttttcttcattat |
27468943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 313
Target Start/End: Complemental strand, 27489721 - 27489628
Alignment:
| Q |
220 |
caacctcatatttgttcatgcattaactatcacttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
313 |
Q |
| |
|
||||||||||||| |||||||||||| | |||| |||||||||||||||| || |||||||| ||||||||||| ||| || |||||||| |
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| T |
27489721 |
caacctcatatttattcatgcattaattggtactttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca |
27489628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 27524102 - 27524041
Alignment:
| Q |
252 |
cttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
313 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| ||||||||||| | | |||||||||||| |
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|
| T |
27524102 |
cttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca |
27524041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 27514472 - 27514410
Alignment:
| Q |
251 |
acttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
313 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| |||| |||||| | | |||||||||||| |
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|
| T |
27514472 |
acttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
27514410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 27503499 - 27503442
Alignment:
| Q |
256 |
ataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
313 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| | | || ||||||||| |
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|
| T |
27503499 |
ataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtcca |
27503442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 27556962 - 27557021
Alignment:
| Q |
254 |
tcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
313 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||||||| | |||| |||| |||| |
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|
| T |
27556962 |
tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttcca |
27557021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 27508486 - 27508425
Alignment:
| Q |
252 |
cttcataattttgtaaacatgtttcagacatgtcttcttcattatcaaagtgctgatgtcca |
313 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| ||||||||||| | | |||||||||||| |
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|
| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
27508425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 27476133 - 27476173
Alignment:
| Q |
256 |
ataattttgtaaacatgtttcagacatgtcttcttcattat |
296 |
Q |
| |
|
|||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
27476133 |
ataattttgtaagcatgcttcagacatgttttcttcattat |
27476173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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