View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12514_low_5 (Length: 314)
Name: NF12514_low_5
Description: NF12514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12514_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 38 - 304
Target Start/End: Complemental strand, 12268588 - 12268326
Alignment:
| Q |
38 |
cagtgaaataatcaggtaaattcgtggaaacttcaattctcaaagtccatttgctttcatgcatgtttctcctatattcactaaattaaaattcattgat |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12268588 |
cagtgaaataatcaggtaaattcgtggaaacttcaattctcaaagtccatttgctttcatgcatgtttctcctatattcactaaattaaaattcattgat |
12268489 |
T |
|
| Q |
138 |
tgatgacagctttgaagccatgcatgttgactaaaaagctatattatgtatatacatgtatgtattcgaggcattcatacaatgttctgaattatagtat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12268488 |
tgatgacagctttgaagccatgcatgttgactaaaaagctatattatgtatatacat----gtattcgaggcattcatacaatgttctgaattatgatat |
12268393 |
T |
|
| Q |
238 |
caataccttaattttgaagtcatctttggagatgtttaattagcggttatatcatacaatccctatg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12268392 |
caataccttaattttgaagtcatctttggagatgtttaattagcggttatatcatacaatccctatg |
12268326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University