View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12514_low_7 (Length: 223)

Name: NF12514_low_7
Description: NF12514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12514_low_7
NF12514_low_7
[»] chr8 (5 HSPs)
chr8 (13-205)||(38120660-38120855)
chr8 (73-205)||(38609268-38609400)
chr8 (73-205)||(38794051-38794183)
chr8 (117-204)||(34592867-34592957)
chr8 (83-131)||(38287450-38287498)
[»] chr4 (3 HSPs)
chr4 (13-205)||(28730237-28730429)
chr4 (114-185)||(33078483-33078557)
chr4 (65-97)||(33078556-33078588)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 38120660 - 38120855
Alignment:
Q  13 agcacagactaaaaagaactaagcaaccgtgtgaattagctacattagatggacaacagcgtaaacttattaactacaaatttcatagagattcacttca 112  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38120660 agcacaaactaaaaagaactaaggaaccgtgtgaattagctacattagatggacaacagtgtaaacttattaactacaaatttcatagagattcacttca 38120759  T
Q  113 gcagagaaagaactaaaccgcaatct---tcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacct 205  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38120760 gcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacct 38120855  T

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Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 38609400 - 38609268
Alignment:
Q  73 gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccat 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38609400 gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccat 38609301  T
Q  173 ggtgatcttcaatctcaaccattggcttgacct 205  Q
    |||||||||||||||||||||||||||||||||    
T  38609300 ggtgatcttcaatctcaaccattggcttgacct 38609268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 38794183 - 38794051
Alignment:
Q  73 gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccat 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38794183 gtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccat 38794084  T
Q  173 ggtgatcttcaatctcaaccattggcttgacct 205  Q
    |||||||||||||||||||||||||||||||||    
T  38794083 ggtgatcttcaatctcaaccattggcttgacct 38794051  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 204
Target Start/End: Complemental strand, 34592957 - 34592867
Alignment:
Q  117 agaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacc 204  Q
    |||||||| ||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  34592957 agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacc 34592867  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 38287498 - 38287450
Alignment:
Q  83 taactacaaatttcatagagattcacttcagcagagaaagaactaaacc 131  Q
    ||||||||| |||||||||| |||||||||||||| |||||| ||||||    
T  38287498 taactacaagtttcatagagtttcacttcagcagaaaaagaagtaaacc 38287450  T

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Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 28730237 - 28730429
Alignment:
Q  13 agcacagactaaaaagaactaagcaaccgtgtgaattagctacattagatggacaacagcgtaaacttattaactacaaatttcatagagattcacttca 112  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| || || ||||||    
T  28730237 agcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacggtgtaaacttattaactacaaatttcatatagttttacttca 28730336  T
Q  113 gcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggccatggtgatcttcaatctcaaccattggcttgacct 205  Q
    |||||||||||| |||| |||||||||| |||| ||| || |||| |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  28730337 gcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccatggtgatcttcaatctcaaacattggcctgacct 28730429  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 33078557 - 33078483
Alignment:
Q  114 cagagaaagaactaaaccgcaatcttcatcatcatc---gaagcatcgcactcacaggccatggtgatcttcaat 185  Q
    ||||||||||| |||||||| |||||||||||||||   ||||||||||| |||||| |||||||||||||||||    
T  33078557 cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat 33078483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 33078588 - 33078556
Alignment:
Q  65 acaacagcgtaaacttattaactacaaatttca 97  Q
    ||||||| |||||||||||||||||||||||||    
T  33078588 acaacagtgtaaacttattaactacaaatttca 33078556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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