View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_high_15 (Length: 349)
Name: NF12515_high_15
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 101 - 330
Target Start/End: Complemental strand, 40312488 - 40312257
Alignment:
| Q |
101 |
tgtgtaaccaagtaaaaaagaccaagtatcacagaaacttcagaagtgaaactgaactaaaaaccaatagttccaactagtgaaacatgaaatccttgtt |
200 |
Q |
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| T |
40312488 |
tgtgtaaccaagtaaaaaagaccaagtatcacagaaacttcagaagtgaaactgaactaaaaaccaatagttccaactagtgaaacatgaaatccttgtt |
40312389 |
T |
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| Q |
201 |
cgcacaaccttaaaaaccgttac--nnnnnnnnncctcttctggttttcaacaaaaccagtggcagcaaatgnnnnnnngtctcnnnnnnnccggaattt |
298 |
Q |
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| T |
40312388 |
cacacaaccttaaaaaccgttactttttttttttccttttctggttttcaacaaaaccagtggcagcaaatgtttttttgtctcaaaaaaaccggaattt |
40312289 |
T |
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| Q |
299 |
tttgctgtcttatctctagaagaagtaaaaaa |
330 |
Q |
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| T |
40312288 |
tttgctgtcttatctctagaagaagtaaaaaa |
40312257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 40312588 - 40312559
Alignment:
| Q |
1 |
taagaccccaaataagggttgtgtttatag |
30 |
Q |
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| T |
40312588 |
taagaccccaaataagggttgtgtttatag |
40312559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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