View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_high_33 (Length: 240)
Name: NF12515_high_33
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40626537 - 40626759
Alignment:
| Q |
1 |
tgtttgctgatgatctgttatttctattgtactacttgtgaattatcactttgtcttttattaatgcatgaaggcaatggattatgaaccatcgtttaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40626537 |
tgtttgctgatgatctgttatttctattgtactacttgtgaattatcact--gtcttttattaatgcatgaaggcaatggattatgaaccatcgtttaag |
40626634 |
T |
|
| Q |
101 |
aaaatcatataagtgtgttgtgtga--annnnnnnngggagctactttcccaacgttttgtaaactagggaaatgctaacggatgtcttcaaaacactgt |
198 |
Q |
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|||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||| |
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| T |
40626635 |
aaaatcatattagtgtgctgtgtgatttttttttttgggagctactttcccaacgttttgtaaactagagaaatgctaacgaatatcttcaaaacaatgt |
40626734 |
T |
|
| Q |
199 |
ttactgtctaaaaatactttcgaac |
223 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
40626735 |
ttactgtctaaaaatactttcgaac |
40626759 |
T |
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