View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_high_39 (Length: 212)
Name: NF12515_high_39
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 44766528 - 44766708
Alignment:
| Q |
16 |
atgaacaatgtcaaaatcaaacataccagacaagacaacaccaacaacaccgaaaaccacatgggttctccctcgtgtgacaaagaatctccatgaagtt |
115 |
Q |
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| T |
44766528 |
atgaacaatgtcaaaatcaaacataccagacaagacaacaccaacaacaccgaaaaccacatgggttctccctcgtgtaacaaagaatctccatgaagtt |
44766627 |
T |
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| Q |
116 |
tacaccttaggtagaaaactgggtcaaggtcaatttgggatcacatatcactgcatacacaactcaacgggtagaacctac |
196 |
Q |
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| T |
44766628 |
tacaccttaggtagaaaactgggtcaaggtcaatttgggatcacatatcactgcacacacaactcaacgggtagaacctac |
44766708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 44756476 - 44756615
Alignment:
| Q |
57 |
caacaacaccgaaaaccacatgggttctccctcgtgtgacaaagaatctccatgaagtttacaccttaggtagaaaactgggtcaaggtcaatttgggat |
156 |
Q |
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| T |
44756476 |
caacaccaccaaaacccacatgggttctcccttatgtaactgaaaatcttcgtgaagtttacaccttaggcagaaaactgggtcaaggtcaatttgggat |
44756575 |
T |
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| Q |
157 |
cacatatcactgcatacacaactcaacgggtagaacctac |
196 |
Q |
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| T |
44756576 |
cacatatcactgcatacacaactcaacgggtagaacctac |
44756615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 23287858 - 23287692
Alignment:
| Q |
17 |
tgaacaatgtcaaaatcaaacataccagacaagacaacaccaacaacaccgaaaaccacatgggttctccctcgtgtgacaaagaatctccatgaagttt |
116 |
Q |
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| T |
23287858 |
tgaacaatgtcgaaatcaaacatcccaaacaacataactccaacaccaccgaaaaccacaagggttcttcctcatgtaacaaagaatctccatgaagtct |
23287759 |
T |
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| Q |
117 |
acaccttaggtagaaaactgggtcaaggtcaatttgggatcacatatcactgcatacacaactcaacg |
184 |
Q |
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|||||||||||| |||| ||||| || |||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
23287758 |
acaccttaggtaaaaaattgggtgaa-gtcaatttggtatcacatatcactgctcacacaacgcaacg |
23287692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 23255563 - 23255741
Alignment:
| Q |
19 |
aacaatgtcaaaatcaaacataccagacaagacaacaccaacaacaccgaaaaccacatgggttctccctcgtgtgacaaagaatctccatgaagtttac |
118 |
Q |
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| T |
23255563 |
aacaatgtcgaaatcgaacatcccaaataacacaacactaacaccaccgaaaaccacaacggttctgccacatgtaacaaataatctacatgaagtatac |
23255662 |
T |
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| Q |
119 |
accttaggtagaaaac-tgggtcaaggtcaatttgggatcacatatcactgcatacacaactcaacgggtagaacctac |
196 |
Q |
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|||||||||| ||||| ||||| |||||||||| | |||||||||||||||| ||||||| |||| ||| ||||||| |
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| T |
23255663 |
accttaggtaaaaaacttgggtgaaggtcaattcgttatcacatatcactgcacacacaacacaacaggtcaaacctac |
23255741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 23256857 - 23256689
Alignment:
| Q |
16 |
atgaacaatgtcaaaatcaaacataccagacaagacaacaccaacaacaccgaaaaccacatgggttctccctcgtgtgacaaagaatctccatgaagtt |
115 |
Q |
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|||||||||||| ||||| ||||| ||| |||| ||||||| |||| ||| | ||||| | |||||||||||| ||| ||||||| |||||||||||| |
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| T |
23256857 |
atgaacaatgtcgaaatcgaacatcccaaacaacacaacactaacaccacaaataaccataagggttctccctcatgtaacaaagattctccatgaagtc |
23256758 |
T |
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| Q |
116 |
tacaccttaggt--agaaaactgggtcaaggtcaatttgggatcacatatcactgcatacacaactcaac |
183 |
Q |
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|||||||||||| | |||||| ||| || |||||||||| |||| |||||| |||| ||||||| |||| |
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| T |
23256757 |
tacaccttaggtaaaaaaaactaggtgaa-gtcaatttggtatcatatatcaatgcacacacaacacaac |
23256689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 23286742 - 23286891
Alignment:
| Q |
45 |
acaagacaacaccaacaacaccgaaaaccacatgggttctccctcgtgtgacaaagaatctccatgaagtttacaccttaggt-agaaaactgggtcaag |
143 |
Q |
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|||| ||||||| |||| ||| |||||||||| |||| ||||| ||| |||| |||||| |||||||| |||||||||||| | |||| ||||| ||| |
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| T |
23286742 |
acaacacaacactaacaccactgaaaaccacaagggt---ccctcctgtaacaatgaatctacatgaagtctacaccttaggtaaaaaaattgggtgaag |
23286838 |
T |
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| Q |
144 |
gtcaatttgggatcacatatcactgcatacacaactcaacgggtagaacctac |
196 |
Q |
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| T |
23286839 |
gtcaattcgttatcacaaaccactgcacacacaacacaacaggtcgaacctac |
23286891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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