View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_high_41 (Length: 207)
Name: NF12515_high_41
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_high_41 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 39676183 - 39675977
Alignment:
| Q |
1 |
cctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttcc |
100 |
Q |
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| T |
39676183 |
cctaatcacagcagcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttcc |
39676084 |
T |
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| Q |
101 |
atcgacaaaactttttggacaaggatttcctccggtagatttggcatgactttggtggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgt |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676083 |
atggacaaaactttttggacaaggatttcctccggtagatttggcatgactttggtggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgt |
39675984 |
T |
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| Q |
201 |
aatgaag |
207 |
Q |
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||||||| |
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| T |
39675983 |
aatgaag |
39675977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 10866606 - 10866502
Alignment:
| Q |
14 |
gcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactt |
113 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||| ||||| |
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| T |
10866606 |
gcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactt |
10866507 |
T |
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| Q |
114 |
tttgg |
118 |
Q |
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||||| |
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| T |
10866506 |
tttgg |
10866502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 10873699 - 10873803
Alignment:
| Q |
14 |
gcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactt |
113 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||| ||||| |
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| T |
10873699 |
gcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactt |
10873798 |
T |
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| Q |
114 |
tttgg |
118 |
Q |
| |
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||||| |
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| T |
10873799 |
tttgg |
10873803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 10878770 - 10878874
Alignment:
| Q |
14 |
gcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactt |
113 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||| ||||| |
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| T |
10878770 |
gcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactt |
10878869 |
T |
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| Q |
114 |
tttgg |
118 |
Q |
| |
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||||| |
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| T |
10878870 |
tttgg |
10878874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 10883841 - 10883945
Alignment:
| Q |
14 |
gcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactt |
113 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||| ||||| |
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| T |
10883841 |
gcacgtcggcaatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactt |
10883940 |
T |
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| Q |
114 |
tttgg |
118 |
Q |
| |
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||||| |
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| T |
10883941 |
tttgg |
10883945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 10887759 - 10887863
Alignment:
| Q |
14 |
gcacgtcggcaatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactt |
113 |
Q |
| |
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||||| ||||||||||| |||||||| ||||| |||||||| ||||||||||| || ||||||||||| |||||||| || |||||||| |||| ||||| |
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| T |
10887759 |
gcacgacggcaatctccgagcttcgactcaagggagtaagaaggaattgatcccgataccactgcaccgacaacctcttcgtcttccatggacataactt |
10887858 |
T |
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| Q |
114 |
tttgg |
118 |
Q |
| |
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||||| |
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| T |
10887859 |
tttgg |
10887863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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