View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_high_5 (Length: 421)
Name: NF12515_high_5
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 35777155 - 35777379
Alignment:
| Q |
13 |
aaggataaaacactttaactgcactagcaagttaaaggnnnnnnnnncacactgcactatgcactaacagattgaagaaaaagaccttagctgctacaca |
112 |
Q |
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| T |
35777155 |
aaggataaaacactttaactgcactagcaagttaaaggaaaaaaaaacacactgcactatgcaccagcagattgaagaaaaagaccttagctgctacaca |
35777254 |
T |
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| Q |
113 |
accaaaccaaacaagagaaagtaacgatccaagtgttcctactaaacctgccaaaatgcccccataataatttaaaaaataatttt-atttatgtcaagt |
211 |
Q |
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| T |
35777255 |
accaaaccaaacaagagaaagtaacgatccaagtgttcctactaaacctgccaaaatgcccccataataatttaaaaaataattttcatttatgtcaagt |
35777354 |
T |
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| Q |
212 |
atttattctccttgtaatatatttt |
236 |
Q |
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| T |
35777355 |
atttattctccttgtaatatatttt |
35777379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 313 - 405
Target Start/End: Original strand, 35777912 - 35778003
Alignment:
| Q |
313 |
ttagcaactagaaagcaaagagcttatcttttgcgggaagaataattctaaccaagtatgagtttcaagtgttgcctacttatgtgatcacac |
405 |
Q |
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| T |
35777912 |
ttagcaactagaaagcaaagagcttatcttt-gcgggaagaataattctaaccaagtatgagtttcaagtgttgcctacttatgtgatcacac |
35778003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 35777789 - 35777871
Alignment:
| Q |
229 |
tatattttaatgcatgatttaattaataattataaagatatggatatgttttttgtgtaaaatattcattttatgtgtgttat |
311 |
Q |
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| T |
35777789 |
tatattttaatgcatgatttaattaataattataaagatatggatatgttttttgtgtaaaatattcattttatgtgtgttat |
35777871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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