View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_1 (Length: 761)
Name: NF12515_low_1
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 318 - 646
Target Start/End: Original strand, 47437106 - 47437441
Alignment:
| Q |
318 |
tcttgaagggaagaaagagcttcatttctagaattttggttttgattacatctttccaaatcaccgattgaagaagtgatgttgattggcatgtctcgaa |
417 |
Q |
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| T |
47437106 |
tcttgaagggaagaaagagcttcatttctagaattttggttttgattacatctttccaaatcaccgattgaagaagtgatgttgattggcatgtctcgaa |
47437205 |
T |
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| Q |
418 |
attgttgtttttgcactggttgaggatgatcaaccacattttggtg--tgacact--ttttg---ttgttgtgcttgaagttgcgtgtaatgaagatcaa |
510 |
Q |
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| T |
47437206 |
attgttgtttttgcactggttgaggatgatcaaccacattttggtgttttgcactagtctcgaaattgttgtgcttgaagttgcgtgtaataaagatcaa |
47437305 |
T |
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| Q |
511 |
aattgcttggatcnnnnnnnnnnnnaagaccagacatgcttgtgtgatatatattattttacgtcactatgtttcttcaaacctcacggtgtattttatg |
610 |
Q |
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| T |
47437306 |
aattgcttggatctttttctttttcaagaccagacatgcttgtgtgatatatattattttacgtcactatgtttcttcaaacctcacggtgaattttatg |
47437405 |
T |
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| Q |
611 |
atatgtcaaaactgaagttaaaaacagtctttatgg |
646 |
Q |
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| T |
47437406 |
atatgtcaaaactgaagttaaaaacagtctttatgg |
47437441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 47436749 - 47437047
Alignment:
| Q |
20 |
caccatgcatgtaagatctcacatttcaatagggttttcataatcctttaccttaatttggttgcgcttgttttgaaaccagaacttgatttgcgtcggt |
119 |
Q |
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| T |
47436749 |
caccgtgcatgtaagatctcaaatttcaatagggttttcataatcctttaccttaatttggttgcgcttgttttgaaactagaacttgatttgcgcaggt |
47436848 |
T |
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| Q |
120 |
gtaagacctagctcacaactcaattgtttcctttgcttgccattagggagagggcattgctcgaagaacctgaaaacatcacaaattgatgatgttaagt |
219 |
Q |
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| T |
47436849 |
gtaaggcctagctcacaactcaattgtttcctttgcttgccattagggagagggcattgctcgaagaacctgaaaacatcacaaattgatgatgttaagt |
47436948 |
T |
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| Q |
220 |
aagaaaaataactaaacaacacaagaaaatatgtttaa-ttatcttnnnnnnnnnggaacagtatcggaacgattgaccctacgattccatttcttgaat |
318 |
Q |
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| T |
47436949 |
aagaaaaataactaaacaacacaagaaaatatgtttaatttatctt-aaaaaaaaggaagagtatcagaacgattgatcctacgattccatttcttgaat |
47437047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 714 - 748
Target Start/End: Original strand, 47437502 - 47437536
Alignment:
| Q |
714 |
gatacatcaattttataccaatgcatttccctatg |
748 |
Q |
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| T |
47437502 |
gatacatcaattttataccaatgtatttccctatg |
47437536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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