View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_12 (Length: 409)
Name: NF12515_low_12
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 7e-96; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 182 - 401
Target Start/End: Complemental strand, 6521719 - 6521502
Alignment:
| Q |
182 |
gttatacaaattgactgagaaatatagcagaagtagaaagtagtactaagataaactagnnnnnnnnnnntctaaatactacaattataaaaatgaaact |
281 |
Q |
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| T |
6521719 |
gttatacaaattgactgagaaatatagcagaagtagaaagtagtactaagataaactagaaaaaaaaa--tctaaatactacaattataaaaatgaaact |
6521622 |
T |
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| Q |
282 |
tgttggaatatgaattaatcaatataaaagccacttaatttatcatcaatatattatatccttttctttcttacaagtttcttccaaaatatcataacca |
381 |
Q |
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| T |
6521621 |
tgttggaatatgaattaagcaatataaaagccacttaatttatcatcaatatattatatccttttctttcttacaagtttcttccaaaatatcataacca |
6521522 |
T |
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| Q |
382 |
ttcacacttcaatctctgct |
401 |
Q |
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|||||||||||||||||||| |
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| T |
6521521 |
ttcacacttcaatctctgct |
6521502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 6522836 - 6522690
Alignment:
| Q |
18 |
acaatgatattgtcccttgcaattaataacttaacttattattatttaagagctttgcagtcatttttaatttgtacgactagtccagtgcttgtgtctg |
117 |
Q |
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| T |
6522836 |
acaatgattttgtcccttgcaattaataacttgacttattattatttaagagctttgcagtcatttttaattggtacgactagtccagtgcttgtgtctg |
6522737 |
T |
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| Q |
118 |
atgtgttagaattttgatgaaataacgttttgaaggataagtgcatt |
164 |
Q |
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| T |
6522736 |
atgtcttagaattttgatgaaataatgttttgaaggattagtgcatt |
6522690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 254 - 385
Target Start/End: Original strand, 13064087 - 13064213
Alignment:
| Q |
254 |
taaatactacaattataaaaatgaaacttgttggaatatgaattaatcaatataaaagccacttaatttatcatcaatatattatatccttttctttctt |
353 |
Q |
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| T |
13064087 |
taaatactacaattataaaaatgaaacttgttggaatatgacttaagcaatatacaagccacttaatttatcatgaa-----tacatccttttctttctt |
13064181 |
T |
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| Q |
354 |
acaagtttcttccaaaatatcataaccattca |
385 |
Q |
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|||||||||||||||||||| | ||||||||| |
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| T |
13064182 |
acaagtttcttccaaaatattacaaccattca |
13064213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 13070843 - 13070888
Alignment:
| Q |
254 |
taaatactacaattataaaaatgaaacttgttggaatatgaattaa |
299 |
Q |
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| T |
13070843 |
taaatactacaattataaaaatgaaacttgttggaatatgacttaa |
13070888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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