View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_14 (Length: 384)
Name: NF12515_low_14
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_14 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 6489 - 6721
Alignment:
| Q |
12 |
aagaatgatagaaacatgtacaaaagatattcagaaaaactagatagggacaatatcggcatatcaattatcttgacaaaggttaaagctatacacactg |
111 |
Q |
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| T |
6489 |
aagaatgatagaaacatgtacaaaagatattcagaaaaactagatagggacaatatcggcatatcaattatcttgacaaaggttaaagccatacacactg |
6588 |
T |
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| Q |
112 |
aatcaataaatcacataattacccatattagaattagaaaaggcctccattaaactcaaatgtattatgtttgtatcatctctgaaattgtctccaataa |
211 |
Q |
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| T |
6589 |
aatcaataaatcacataattacccatattagaattagaaaaggcctccattaaactcaaatgtattatgtttgtatcatctctgaaattgtctccaataa |
6688 |
T |
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| Q |
212 |
gaatgtggtcaaacatttttaatttcagatgtt |
244 |
Q |
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| T |
6689 |
gaatgtggtcaaacatttttaatttcagatgtt |
6721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 244 - 366
Target Start/End: Original strand, 6783 - 6906
Alignment:
| Q |
244 |
ttgtgattcatactgtatacaacctactaaaagaaggctttgtatgtattcttcaaaagaaaaatcatccctgcatctatgtggtgttcattgcctttaa |
343 |
Q |
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| T |
6783 |
ttgtgattcatactgtatacaacctactaaaagaaggctttgtatgtattcttcaaaagaaaaatcatccctgcatctatgtggtgttcattgcctttaa |
6882 |
T |
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| Q |
344 |
gttag-ggtggtaggccgcctaat |
366 |
Q |
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| T |
6883 |
gttagcggtggtaggccgcctaat |
6906 |
T |
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