View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_15 (Length: 384)
Name: NF12515_low_15
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 4570815 - 4570480
Alignment:
| Q |
17 |
aaatgtctgtttttatattaggtaaagaatttctattcgaaagtcaactgtcaaggttaggtgggaaatttcaatatgttaacacattaatcatttgttg |
116 |
Q |
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| T |
4570815 |
aaatgtctgtttttatattaggtaaagaatttctattcgaaagtcaactgtcaaggttaggtgggaaatttcaatatattaacacattaatcatttgttg |
4570716 |
T |
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| Q |
117 |
agtcctaccagcctttcttagcttgcttgagtttcgtatatgttaaaaggacttatgtgcatcatttaaaacttataaggataacattttaactgttaca |
216 |
Q |
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| T |
4570715 |
agtcctaccagcctttcttagcttgcttgagtttcgtatatgttaaaaggacttatgtgcatcatttaaaacttataaggataacattttaacagttaca |
4570616 |
T |
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| Q |
217 |
actactgaaccagaactgaaatatcaactaaaatttctccatatttagtagttgctgaaaacaaaattcattcccacgatctcactgttgggaccagaaa |
316 |
Q |
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| T |
4570615 |
actactgaaccagaactgaaatttcaactaaaatttctccatgtttagtagttgttgaaaacaaaattcattcccacgatctcactgttgggaccagaaa |
4570516 |
T |
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| Q |
317 |
ttaagacaataagaaatttgtacggtacttaactac |
352 |
Q |
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| T |
4570515 |
ttaagacagtaagaaatttgtacggtacttaactac |
4570480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 40842025 - 40841935
Alignment:
| Q |
146 |
agtttcgtatatgttaaaaggacttatgtgcatcatttaaaacttataaggataacattttaactgttacaactactgaaccagaactgaa |
236 |
Q |
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| T |
40842025 |
agttttgtatatgtcaaaaggacctaactgcatcttttaaaacttacaaggacaacattttaacaattactactagggaaccagagctgaa |
40841935 |
T |
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