View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_16 (Length: 379)
Name: NF12515_low_16
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_16 |
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| [»] scaffold0289 (1 HSPs) |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 40293145 - 40293465
Alignment:
| Q |
1 |
aatgccgccaaaaacaaggaaaggctccatcaaagccaccttcacaacagtaagattaaacctaattcattcacacttaacttagatttcgtgtcacgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40293145 |
aatgccgccaaaaacaaggaaaggctccatcaaagccaccttcacaacagtaagattaaacctaattcattcacacttaacttagatttcgtgtcacgca |
40293244 |
T |
|
| Q |
101 |
agagagtctaatcgtcaaggttaagctattttcacnnnnnnnnnnnnnnnngggttttgcttcacaaacttaccctaataatatttgtgtttaggataac |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40293245 |
agagagtctaatcgtcaaggttaagctattttcacaaaataaaataaaaaagggttttgcttcacaaacttaccctaataatatttgtgtttaggataac |
40293344 |
T |
|
| Q |
201 |
tagaccatcgacccgtgctccgcacgggtcataccagcaaagagctttgaagataagtaacttattctataatacgtgtatggcaatagttcatattgat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40293345 |
tagaccatcgacccgtgctccgcacgggtcataccagcaaagagcttcgaagataagtaacttattctataataagtgtatggcaatagttcatattgat |
40293444 |
T |
|
| Q |
301 |
gcgcgtcaaacaaacaaaaac |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
40293445 |
gcgcgtcaaacaaacaaaaac |
40293465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 39332968 - 39333005
Alignment:
| Q |
199 |
actagaccatcgacccgtgctccgcacgggtcatacca |
236 |
Q |
| |
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| T |
39332968 |
actagactatcgacccgtgctccgcacgggtcctacca |
39333005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 9056 - 9095
Alignment:
| Q |
199 |
actagaccatcgacccgtgctccgcacgggtcataccagc |
238 |
Q |
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| T |
9056 |
actagaccatcgaccagtgctccgcacgggtcataccagc |
9095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 42084394 - 42084356
Alignment:
| Q |
198 |
aactagaccatcgacccgtgctccgcacgggtcatacca |
236 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
42084394 |
aactagaccatcgacccgtgctccgcacgggtcctacca |
42084356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 25932 - 25892
Alignment:
| Q |
198 |
aactagaccatcgacccgtgctccgcacgggtcataccagc |
238 |
Q |
| |
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||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
25932 |
aactagaccatcgacccatgctccgcacgggtcttaccagc |
25892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 11481834 - 11481874
Alignment:
| Q |
198 |
aactagaccatcgacccgtgctccgcacgggtcataccagc |
238 |
Q |
| |
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||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
11481834 |
aactagaccattgacccgtgctccgcacgggtcctaccagc |
11481874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 5338283 - 5338244
Alignment:
| Q |
199 |
actagaccatcgacccgtgctccgcacgggtcataccagc |
238 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||| |
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| T |
5338283 |
actagaccatcgacccgtgctccgcaagggtcctaccagc |
5338244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 11856210 - 11856248
Alignment:
| Q |
198 |
aactagaccatcgacccgtgctccgcacgggtcatacca |
236 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||| |
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| T |
11856210 |
aactagaccattgacccgtgctccgcacgggtcctacca |
11856248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 47508150 - 47508113
Alignment:
| Q |
201 |
tagaccatcgacccgtgctccgcacgggtcataccagc |
238 |
Q |
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|||| ||||||| ||||||||||||||||||||||||| |
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| T |
47508150 |
tagatcatcgactcgtgctccgcacgggtcataccagc |
47508113 |
T |
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