View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_17 (Length: 376)
Name: NF12515_low_17
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 5159408 - 5159762
Alignment:
| Q |
18 |
agacacataagaagtactcctgtgtttaatctgtcaaatttaactgataattctccatggtatgttttcccttatctaaactttat-ttgcaaagcatgg |
116 |
Q |
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| T |
5159408 |
agacacataagaagtactcctgtgtttaatctgtcaaatttaactgataattctccatggtatgttttcccttatctaaactttatcttgcaaagcatgg |
5159507 |
T |
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| Q |
117 |
ctatttgtggacccaacaagaagaaagcacatagccaatacctaccaaccaaactaatcacattatcctcaacagctctttcacaaccacaaaccaaacc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159508 |
ctatttgtggacccaacaagaagaaagcacatagccaataactaccaaccaaactaatcacattatcctcaacagctctttcacaaccacaaaccaaacc |
5159607 |
T |
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| Q |
217 |
agaaaaaacatcactcattctcagactacacaaaggtcacaaacagaggggnnnnnnnctacaaattctgaagaatagagagagcataaaaaagacgagg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159608 |
agaaaaaacatcactcattctcagactacacaaaggtcacaaacagaggggaaaaaaactacaaattctgaagaatagagagagcataaaaaagacgagg |
5159707 |
T |
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| Q |
317 |
tatcttgttcttgtgataagataatatgctcttacgtggcaacatctctgctcct |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5159708 |
tatcttgttcttgtgataagataatatgctcttacgtggcaacatctatgctcct |
5159762 |
T |
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