View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_21 (Length: 349)
Name: NF12515_low_21
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 50502519 - 50502206
Alignment:
| Q |
15 |
cacagaggaacacctgaaaaccctgcaagaacttgcactttggaggagaaagaaggggaaatttgcgtaagtttatatttgatttctgtgatgctttatc |
114 |
Q |
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| T |
50502519 |
cacagaggaacacctgaaaaccctgcaagaacttgcactttggaggagaaagaaggggaaatttgcgtaagtttatatttgatttctgtgatgctttatc |
50502420 |
T |
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| Q |
115 |
ttgtcttgaagtgattatttttatatttgatttcttactatcatttttgttttcagtggggagttgcttattgcgttcgaggaggccctgaaaaggaaaa |
214 |
Q |
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| T |
50502419 |
ttgtcttgaagtgattatttttatatttgatttcttactatcatttttgttttcagtggggagttgcttattgcgttcgaggaggccctgaaaaggaaaa |
50502320 |
T |
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| Q |
215 |
actggctatgcaggtaaaactattttttccctatacaattctaaacttaaactagttctctagcctataataagtttatattttttcccattctgatcga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50502319 |
actggctatgcaggtaaaactattttttccctatacaattctaaacttaaactagttctctagcctataataagtttatattttttcccattctgatcga |
50502220 |
T |
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| Q |
315 |
tccaatatttcttt |
328 |
Q |
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|||||||||||||| |
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| T |
50502219 |
tccaatatttcttt |
50502206 |
T |
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