View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12515_low_27 (Length: 319)

Name: NF12515_low_27
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12515_low_27
NF12515_low_27
[»] chr3 (18 HSPs)
chr3 (169-301)||(10359984-10360116)
chr3 (169-301)||(9981141-9981273)
chr3 (1-95)||(9980978-9981072)
chr3 (1-95)||(10360185-10360279)
chr3 (100-262)||(10264591-10264751)
chr3 (214-301)||(10130686-10130773)
chr3 (214-301)||(10372242-10372329)
chr3 (116-179)||(10430097-10430160)
chr3 (1-46)||(10264485-10264530)
chr3 (138-195)||(11772695-11772752)
chr3 (162-196)||(10134711-10134745)
chr3 (148-187)||(10093176-10093215)
chr3 (148-187)||(10200058-10200097)
chr3 (140-197)||(10130614-10130671)
chr3 (162-195)||(10130846-10130879)
chr3 (162-195)||(10372136-10372169)
chr3 (140-197)||(10372344-10372401)
chr3 (169-198)||(10584614-10584643)
[»] scaffold0083 (2 HSPs)
scaffold0083 (169-301)||(53864-53996)
scaffold0083 (1-95)||(54065-54159)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 10360116 - 10359984
Alignment:
Q  169 tagggtttgtaatattcttaatttgtaacannnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcattt 268  Q
    ||||||||||||||||||||||||||||||          || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10360116 tagggtttgtaatattcttaatttgtaacattttttgtttgcaacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcattt 10360017  T
Q  269 gttgaattaatattggttctaaatattcatatt 301  Q
    |||||||||||||||||||||||||||||||||    
T  10360016 gttgaattaatattggttctaaatattcatatt 10359984  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 9981141 - 9981273
Alignment:
Q  169 tagggtttgtaatattcttaatttgtaacannnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcattt 268  Q
    ||||||||||||||||||||||||||||||          || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9981141 tagggtttgtaatattcttaatttgtaacattttttgtttgcaacgtgattcttaatttgtaattttaaatgaatgctcatatgataaaaccatgcattt 9981240  T
Q  269 gttgaattaatattggttctaaatattcatatt 301  Q
    |||||||||||||||||||||||||||||||||    
T  9981241 gttgaattaatattggttctaaatattcatatt 9981273  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 9980978 - 9981072
Alignment:
Q  1 atgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgacaaattgaagactcagcggcttccattgattgc 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  9980978 atgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcatccattgattgc 9981072  T

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Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 10360279 - 10360185
Alignment:
Q  1 atgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgacaaattgaagactcagcggcttccattgattgc 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  10360279 atgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcagcttccattgattgc 10360185  T

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Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 10264591 - 10264751
Alignment:
Q  100 ttgtattttattatcatttgaatgtttcctaatatcccgcatgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgtaacan 199  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||      
T  10264591 ttgtattttattatcatttgaatgtttcgtaataacctgcatgatccgatcagacaaagtacaatgtagtaggatttgtaatattcttaatttgtaactt 10264690  T
Q  200 nnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccat 262  Q
               ||||||||||||||||||||| |||||  |||||||| ||||||||||||||    
T  10264691 tttttttcg--gacgtgattcttaatttgtaactttaagcgaatgctcatatgataaaaccat 10264751  T

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Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 10130686 - 10130773
Alignment:
Q  214 gtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcatttgttgaattaatattggttctaaatattcatatt 301  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10130686 gtgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttgaattaatattggttctaaatattcatatt 10130773  T

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Target: chr3; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 10372329 - 10372242
Alignment:
Q  214 gtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcatttgttgaattaatattggttctaaatattcatatt 301  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372329 gtgattcttaatttgtaactttaagtgaatgctcatatgataaaaccatgcatttgttgaattaatattggttctaaatattcatatt 10372242  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 10430160 - 10430097
Alignment:
Q  116 tttgaatgtttcctaatatcccgcatgatccggtcagacaaagtacaatgcagtagggtttgta 179  Q
    |||| ||||||| ||||| || |||||||||||||||||| | |||||||||||||||||||||    
T  10430160 tttgtatgtttcataataacctgcatgatccggtcagacagattacaatgcagtagggtttgta 10430097  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10264485 - 10264530
Alignment:
Q  1 atgtggatgataatctgctcacttgatgaattgaagaaaactgctt 46  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||    
T  10264485 atgtggatgataatcagctcacttgatgaattgaagaaaaatgctt 10264530  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 11772695 - 11772752
Alignment:
Q  138 gcatgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgta 195  Q
    ||||||||| || |||||||||| |||||| |||| ||||||||||||||||||||||    
T  11772695 gcatgatcccgttagacaaagtagaatgcattaggatttgtaatattcttaatttgta 11772752  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 196
Target Start/End: Original strand, 10134711 - 10134745
Alignment:
Q  162 aatgcagtagggtttgtaatattcttaatttgtaa 196  Q
    |||||||||||||||||||||||||||||||||||    
T  10134711 aatgcagtagggtttgtaatattcttaatttgtaa 10134745  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 10093176 - 10093215
Alignment:
Q  148 gtcagacaaagtacaatgcagtagggtttgtaatattctt 187  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  10093176 gtcatacagagtacaatgcagtagggtttgtaatattctt 10093215  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 10200058 - 10200097
Alignment:
Q  148 gtcagacaaagtacaatgcagtagggtttgtaatattctt 187  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  10200058 gtcatacagagtacaatgcagtagggtttgtaatattctt 10200097  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 10130614 - 10130671
Alignment:
Q  140 atgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgtaac 197  Q
    |||||| ||||||||||| |||||||  |||||||||| ||||||  |||||||||||    
T  10130614 atgatctggtcagacaaaatacaatgttgtagggtttgcaatatttataatttgtaac 10130671  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 10130846 - 10130879
Alignment:
Q  162 aatgcagtagggtttgtaatattcttaatttgta 195  Q
    ||||| ||||||||||||||||||||||||||||    
T  10130846 aatgcggtagggtttgtaatattcttaatttgta 10130879  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 10372169 - 10372136
Alignment:
Q  162 aatgcagtagggtttgtaatattcttaatttgta 195  Q
    ||||| ||||||||||||||||||||||||||||    
T  10372169 aatgcggtagggtttgtaatattcttaatttgta 10372136  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 10372401 - 10372344
Alignment:
Q  140 atgatccggtcagacaaagtacaatgcagtagggtttgtaatattcttaatttgtaac 197  Q
    |||||| ||||||||||| |||||||  |||||||||| ||||||  |||||||||||    
T  10372401 atgatctggtcagacaaaatacaatgttgtagggtttgcaatatttataatttgtaac 10372344  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 198
Target Start/End: Original strand, 10584614 - 10584643
Alignment:
Q  169 tagggtttgtaatattcttaatttgtaaca 198  Q
    ||||||||||||||||||||||||||||||    
T  10584614 tagggtttgtaatattcttaatttgtaaca 10584643  T

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Target: scaffold0083 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 53996 - 53864
Alignment:
Q  169 tagggtttgtaatattcttaatttgtaacannnnnnnnnngcgacgtgattcttaatttgtaattttaaatgaatgctcgtatgataaaaccatgcattt 268  Q
    ||||||||||||||||||||||||||||||          || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53996 tagggtttgtaatattcttaatttgtaacattttttgtttgcaacgtgattcttaatttgtaattttaaatgaatgctcatatgataaaaccatgcattt 53897  T
Q  269 gttgaattaatattggttctaaatattcatatt 301  Q
    |||||||||||||||||||||||||||||||||    
T  53896 gttgaattaatattggttctaaatattcatatt 53864  T

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Target: scaffold0083; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 54159 - 54065
Alignment:
Q  1 atgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgacaaattgaagactcagcggcttccattgattgc 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  54159 atgtggatgataatctgctcacttgatgaattgaagaaaactgcttctttgattttttatgaggaattgaagactcagcggcatccattgattgc 54065  T

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