View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12515_low_3 (Length: 513)

Name: NF12515_low_3
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12515_low_3
NF12515_low_3
[»] chr7 (30 HSPs)
chr7 (46-500)||(48638644-48639097)
chr7 (421-493)||(30991693-30991765)
chr7 (417-496)||(2354038-2354117)
chr7 (421-496)||(12140470-12140545)
chr7 (421-500)||(45418299-45418378)
chr7 (416-498)||(32277646-32277728)
chr7 (421-496)||(22773520-22773595)
chr7 (421-500)||(40449365-40449444)
chr7 (416-498)||(22967759-22967841)
chr7 (421-498)||(22325031-22325108)
chr7 (421-498)||(27711938-27712015)
chr7 (428-496)||(4680521-4680589)
chr7 (429-493)||(11650202-11650266)
chr7 (428-500)||(34838267-34838339)
chr7 (421-496)||(2852829-2852904)
chr7 (433-496)||(4681252-4681315)
chr7 (421-496)||(9396376-9396451)
chr7 (423-498)||(21225071-21225146)
chr7 (428-498)||(1565958-1566028)
chr7 (449-498)||(6250462-6250511)
chr7 (449-498)||(16673918-16673967)
chr7 (449-498)||(17648286-17648335)
chr7 (421-497)||(9140990-9141066)
chr7 (418-498)||(18487934-18488014)
chr7 (429-496)||(40409182-40409248)
chr7 (419-496)||(16362173-16362250)
chr7 (418-498)||(35125522-35125602)
chr7 (449-500)||(5553592-5553643)
chr7 (462-497)||(24787397-24787432)
chr7 (436-498)||(21128810-21128872)
[»] chr5 (19 HSPs)
chr5 (419-498)||(14164203-14164282)
chr5 (415-494)||(38110599-38110678)
chr5 (421-498)||(41511692-41511769)
chr5 (419-496)||(10409937-10410014)
chr5 (421-498)||(19123510-19123587)
chr5 (428-496)||(26522716-26522784)
chr5 (421-496)||(41092268-41092343)
chr5 (431-496)||(38004044-38004109)
chr5 (416-498)||(16306114-16306196)
chr5 (428-498)||(20563314-20563384)
chr5 (439-500)||(9487349-9487410)
chr5 (416-493)||(16538208-16538285)
chr5 (421-496)||(7672744-7672819)
chr5 (421-496)||(23141383-23141458)
chr5 (421-496)||(43394566-43394641)
chr5 (418-500)||(19322776-19322858)
chr5 (449-497)||(7129214-7129262)
chr5 (421-500)||(12441618-12441697)
chr5 (423-493)||(16529369-16529439)
[»] chr3 (17 HSPs)
chr3 (421-496)||(23777260-23777335)
chr3 (418-498)||(20876488-20876568)
chr3 (421-500)||(51654743-51654822)
chr3 (416-493)||(24365967-24366044)
chr3 (421-498)||(47501157-47501234)
chr3 (421-498)||(860693-860770)
chr3 (421-498)||(38886836-38886913)
chr3 (421-493)||(11454797-11454869)
chr3 (421-496)||(37760894-37760969)
chr3 (421-498)||(11523322-11523399)
chr3 (434-498)||(53046926-53046990)
chr3 (449-496)||(836846-836893)
chr3 (424-498)||(25916696-25916770)
chr3 (421-498)||(10267385-10267462)
chr3 (421-496)||(36642740-36642815)
chr3 (419-484)||(2730927-2730992)
chr3 (421-493)||(45514226-45514298)
[»] chr1 (26 HSPs)
chr1 (416-498)||(21618819-21618901)
chr1 (419-498)||(39282411-39282490)
chr1 (421-498)||(47791425-47791502)
chr1 (421-500)||(6537107-6537186)
chr1 (421-496)||(12116086-12116161)
chr1 (421-496)||(28949507-28949582)
chr1 (419-496)||(27296735-27296812)
chr1 (428-496)||(24595630-24595698)
chr1 (419-499)||(52741032-52741112)
chr1 (421-500)||(5429664-5429743)
chr1 (430-493)||(51114323-51114386)
chr1 (416-498)||(21882787-21882869)
chr1 (421-498)||(1648275-1648352)
chr1 (418-498)||(3226478-3226558)
chr1 (421-498)||(16165190-16165267)
chr1 (419-498)||(18913127-18913206)
chr1 (415-498)||(25931328-25931411)
chr1 (421-496)||(48411583-48411658)
chr1 (421-500)||(52407480-52407559)
chr1 (416-498)||(4099887-4099969)
chr1 (421-498)||(44451666-44451743)
chr1 (453-498)||(21618699-21618744)
chr1 (421-498)||(44264533-44264610)
chr1 (421-496)||(1155675-1155750)
chr1 (421-496)||(42491593-42491669)
chr1 (450-496)||(44099254-44099300)
[»] chr4 (30 HSPs)
chr4 (421-498)||(52688589-52688666)
chr4 (421-496)||(37325309-37325384)
chr4 (421-498)||(28379295-28379372)
chr4 (433-498)||(47427788-47427853)
chr4 (430-497)||(24050949-24051016)
chr4 (421-498)||(2479032-2479109)
chr4 (419-496)||(12795491-12795568)
chr4 (428-497)||(44500944-44501013)
chr4 (418-493)||(32010479-32010554)
chr4 (421-496)||(47769368-47769443)
chr4 (421-498)||(8396884-8396962)
chr4 (416-498)||(28813914-28813996)
chr4 (421-498)||(18000253-18000330)
chr4 (431-496)||(23952134-23952199)
chr4 (433-498)||(54652894-54652959)
chr4 (421-493)||(48076778-48076850)
chr4 (444-500)||(53143038-53143094)
chr4 (421-496)||(14989355-14989430)
chr4 (431-498)||(22293680-22293747)
chr4 (428-498)||(2177829-2177899)
chr4 (416-498)||(8119293-8119375)
chr4 (418-496)||(8478511-8478589)
chr4 (417-498)||(29968575-29968656)
chr4 (437-497)||(4942393-4942453)
chr4 (421-496)||(36639766-36639841)
chr4 (428-498)||(7822305-7822379)
chr4 (435-496)||(21580846-21580907)
chr4 (453-498)||(52688741-52688786)
chr4 (421-493)||(15464994-15465066)
chr4 (463-500)||(41850909-41850946)
[»] chr8 (18 HSPs)
chr8 (419-498)||(30206533-30206612)
chr8 (421-494)||(3990820-3990893)
chr8 (421-498)||(9389510-9389587)
chr8 (428-496)||(42046075-42046143)
chr8 (428-498)||(23959909-23959979)
chr8 (428-498)||(34948252-34948322)
chr8 (421-498)||(38111720-38111797)
chr8 (421-500)||(30436842-30436922)
chr8 (421-496)||(32063229-32063303)
chr8 (421-496)||(39921842-39921917)
chr8 (421-495)||(27852984-27853058)
chr8 (421-498)||(14683419-14683496)
chr8 (421-498)||(23086389-23086466)
chr8 (423-496)||(37197296-37197369)
chr8 (428-500)||(35618027-35618099)
chr8 (421-500)||(1199856-1199935)
chr8 (435-498)||(44434617-44434680)
chr8 (462-498)||(603905-603941)
[»] chr6 (11 HSPs)
chr6 (419-498)||(17905476-17905555)
chr6 (419-500)||(34294610-34294691)
chr6 (421-496)||(9829333-9829408)
chr6 (421-496)||(25068605-25068680)
chr6 (431-497)||(4099565-4099631)
chr6 (416-498)||(17203583-17203665)
chr6 (421-498)||(29202805-29202882)
chr6 (428-498)||(1394371-1394441)
chr6 (444-496)||(4810704-4810756)
chr6 (462-500)||(32207949-32207987)
chr6 (444-500)||(26831804-26831860)
[»] chr2 (23 HSPs)
chr2 (421-500)||(41327165-41327244)
chr2 (421-496)||(44543362-44543437)
chr2 (421-498)||(833282-833359)
chr2 (421-498)||(2131974-2132051)
chr2 (417-498)||(11658250-11658331)
chr2 (421-498)||(17370679-17370756)
chr2 (421-500)||(14335829-14335908)
chr2 (421-495)||(11736862-11736936)
chr2 (421-498)||(37130761-37130838)
chr2 (428-496)||(627994-628062)
chr2 (421-498)||(10128784-10128861)
chr2 (421-498)||(20639781-20639858)
chr2 (419-498)||(8430564-8430642)
chr2 (421-496)||(12896042-12896117)
chr2 (449-498)||(28611552-28611601)
chr2 (421-496)||(29550743-29550818)
chr2 (433-496)||(44257062-44257125)
chr2 (421-498)||(27351509-27351586)
chr2 (449-498)||(30556867-30556916)
chr2 (449-500)||(11131748-11131799)
chr2 (421-496)||(12898648-12898723)
chr2 (63-98)||(41939104-41939139)
chr2 (428-496)||(6348486-6348554)
[»] scaffold0294 (1 HSPs)
scaffold0294 (428-500)||(12138-12210)
[»] scaffold0018 (1 HSPs)
scaffold0018 (416-496)||(163381-163461)
[»] scaffold0240 (1 HSPs)
scaffold0240 (419-496)||(13672-13749)
[»] scaffold0090 (1 HSPs)
scaffold0090 (462-500)||(12013-12051)
[»] scaffold0013 (1 HSPs)
scaffold0013 (421-498)||(104989-105066)
[»] scaffold0504 (1 HSPs)
scaffold0504 (416-493)||(1329-1407)
[»] scaffold0059 (1 HSPs)
scaffold0059 (421-498)||(70582-70659)


Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 46 - 500
Target Start/End: Original strand, 48638644 - 48639097
Alignment:
Q  46 tgaacttagctacaaaccataatatatgtaagatttgagattcaaactccgacaaacactagataaaaagggtcaaaccaaaaataactttgaaagcaat 145  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48638644 tgaacttagctacaaaccataatataagcaagatttgagattcaaactccgacaaacattagataaaaagggtcaaaccaaaaataactttgaaagcaat 48638743  T
Q  146 acaaactggtgtattaagcaaattggaattggtctctgtacatgtaggggcggcgtgatttctcactgcatacgcctctacaaacctagtttaattttca 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  48638744 acaaactggtgtattaagcaaattggaattggtctctgtacatgtaggggcggcgtgatttctcactgcatacgcctctacaaacctag-----ttttca 48638838  T
Q  246 gtttttactctcgttacaactataattacattatcttcattattcacaatgaagtacttttgaggaggatcccacttgatattgactagcttataagatt 345  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48638839 gttttcactctcgttacaactataattacattatcttcattattcacaatgaagtacttttgaggaggatcccacttgatattgactagcttataagatt 48638938  T
Q  346 acctagataagcttcgctgattttcaagtgactttttggacgagaagaagctccctttcaaattttagggttaattag----attgttgacccgtgctcc 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    ||||||||||||||||||    
T  48638939 acctagataagcttcgctgattttcaagtgactttttggacgagaagaagctccctttgaaattttagggttaactagattaattgttgacccgtgctcc 48639038  T
Q  442 gttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    | |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  48639039 gctcggatttattgcaaatagattgacatacaaataataaaatgtaatatataattgat 48639097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 421 - 493
Target Start/End: Complemental strand, 30991765 - 30991693
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    |||||| ||||||||||||||| ||||||||||||||||  ||||||||||  ||||||||||||||||||||    
T  30991765 tagatttttgacccgtgctccgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatat 30991693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 2354038 - 2354117
Alignment:
Q  417 taattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||||| ||||||||||||||| | || |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  2354038 taattagatttttgacccgtgctccgcttgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 2354117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 12140470 - 12140545
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| |||| |||||||||| |||| || ||||||||  |||||||||||||||||||||||||||||||||||    
T  12140470 tagatttttgatccgtgctccggtcgggttcattgtaaagggattgacatataaataataaaatgcaatatataat 12140545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 500
Target Start/End: Original strand, 45418299 - 45418378
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||| ||||||||||||||  || | |||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  45418299 tagatttttgacccgtgctccactcagttttattgtaaagggattgacatacaaataataaaatgcaatatataattgat 45418378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 32277646 - 32277728
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||| |||||| || |||||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  32277646 ttaactagattttttacccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 32277728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 22773520 - 22773595
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||| ||||||||| ||| ||||||||||||  ||||||||||  |||||||||||||||||||||||    
T  22773520 tagatttttgacacgtgctccgctcgaatttattgtaaaaggattgacatacgaataataaaatgcaatatataat 22773595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 500
Target Start/End: Original strand, 40449365 - 40449444
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||| || |||||||| ||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||||||    
T  40449365 tagatttttaacccgtgccccgatcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattgat 40449444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 22967759 - 22967841
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||| ||||||||||||||||||  ||   ||||||||||| ||  |||||||||| ||||||||||||||||||||||||||    
T  22967759 ttaactagattgttgacccgtgcgtcgcaaggatttattgttaagggattgacatacaaataataaaatgcaatatataattg 22967841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 22325108 - 22325031
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||| ||||||| |||  ||||||| ||| |||||||||||  |||||||||||||||||||||||||    
T  22325108 tagatttttgacccatgctccgctcgagtttattgaaaagagattgacatacgaataataaaatgcaatatataattg 22325031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 27711938 - 27712015
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||| |||  |||||| |||| | |||||||||  |||||||||||||||||||||||||    
T  27711938 tagatttttgacccgtgctccgctcgagtttattataaagatattgacatacgaataataaaatgcaatatataattg 27712015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 428 - 496
Target Start/End: Original strand, 4680521 - 4680589
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||||| |||  |||| ||||||||||| |||||||||||  |||||||||||||||||||||||    
T  4680521 ttgacccgtgatccactcgggtttattgtaaagagattgacatacgaataataaaatgcaatatataat 4680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 493
Target Start/End: Complemental strand, 11650266 - 11650202
Alignment:
Q  429 tgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    ||||||||||| || ||||||||||||||||  ||||||||||  ||||||||||||||||||||    
T  11650266 tgacccgtgcttcgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatat 11650202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 428 - 500
Target Start/End: Complemental strand, 34838339 - 34838267
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||||||| || | |||| |||||||||||  ||||||||||  |||||||||||||||||||||||||||    
T  34838339 ttgacccgtgttctgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattgat 34838267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 2852829 - 2852904
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| |||||| |||||||||||   |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  2852829 tagatttttgacctgtgctccgttcaagtttattgtaaagggattgacatacgaataataaaatgcaatatataat 2852904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 496
Target Start/End: Original strand, 4681252 - 4681315
Alignment:
Q  433 ccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  4681252 ccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 4681315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 9396451 - 9396376
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||||||||| |||| |||| ||||||  ||||||||||  ||||||||||| |||||||||||    
T  9396451 tagatttttgacccgtgctccgctcgggtttaatgtaaaaggattgacatacgaataataaaatacaatatataat 9396376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 423 - 498
Target Start/End: Complemental strand, 21225146 - 21225071
Alignment:
Q  423 gattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||| |||||||||| |||||| || ||||||  ||| |||||||||||| ||||||||| |||||||||||||||    
T  21225146 gatttttgacccgtgttccgtttgggtttatttcaaagagattgacatatgaataataaattgcaatatataattg 21225071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 498
Target Start/End: Original strand, 1565958 - 1566028
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||||||||| |||| |||||||||||  ||||||||||  || | ||||||||||||||||||||    
T  1565958 ttgacccgtgctccgctcgggtttattgtaaagggattgacatacgaacagtaaaatgcaatatataattg 1566028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 6250511 - 6250462
Alignment:
Q  449 tttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  6250511 tttattgtaaagggattgacatataaataataaaatgtaatatataattg 6250462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 16673967 - 16673918
Alignment:
Q  449 tttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  16673967 tttattgtaaagggattgacatacaaataataaaatgcaatatataattg 16673918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 498
Target Start/End: Complemental strand, 17648335 - 17648286
Alignment:
Q  449 tttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  17648335 tttattgtaaagggattgacatacaaataataaaatgcaatatataattg 17648286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 497
Target Start/End: Original strand, 9140990 - 9141066
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataatt 497  Q
    |||||| |||| |||||||| | |||| |||||||||||  ||||||||||  |||||||||||| |||||||||||    
T  9140990 tagatttttgatccgtgctctgctcgggtttattgtaaagggattgacatacgaataataaaatgaaatatataatt 9141066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 498
Target Start/End: Complemental strand, 18488014 - 18487934
Alignment:
Q  418 aattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||| ||| ||||||||||||||| |||| ||||| |||||  ||||||||||  ||||||||||||||| || ||||||    
T  18488014 aattaaatttttgacccgtgctccgctcgggtttatagtaaagggattgacatacgaataataaaatgcaaaatgtaattg 18487934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 496
Target Start/End: Original strand, 40409182 - 40409248
Alignment:
Q  429 tgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||| ||||||||||||||||  ||||||||||  || ||||||||||||||||||||    
T  40409182 tgacccatgctccgctcggatttattgtaaagggattgacatacgaa-aataaaatgcaatatataat 40409248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 496
Target Start/End: Original strand, 16362173 - 16362250
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||| ||||| |||  |||| |||| |||||||||||  ||||||||||  |||||||||||||| ||||||||    
T  16362173 attagatttttgactcgtattccgctcgggtttattgtaaagggattgacatacgaataataaaatgcactatataat 16362250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 498
Target Start/End: Complemental strand, 35125602 - 35125522
Alignment:
Q  418 aattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||| ||||| ||||||| | |||  |||||||||||  |||| | ||||  ||||||||||||||||||||||||    
T  35125602 aattagatttttgactcgtgctctgctcgagtttattgtaaagggattaatatatggataataaaatgcaatatataattg 35125522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 500
Target Start/End: Original strand, 5553592 - 5553643
Alignment:
Q  449 tttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||||| ||  ||||||||||| |||||||||||| ||||||||||||||    
T  5553592 tttattgttaagggattgacatatgaataataaaatgaaatatataattgat 5553643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 497
Target Start/End: Original strand, 24787397 - 24787432
Alignment:
Q  462 gattgacatataaataataaaatgcaatatataatt 497  Q
    |||||||||| |||||||||||||||||||||||||    
T  24787397 gattgacataaaaataataaaatgcaatatataatt 24787432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 498
Target Start/End: Complemental strand, 21128872 - 21128810
Alignment:
Q  436 tgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||| || ||||||| |||   |||||||||  |||||||||||||||||||||||||    
T  21128872 tgctccgtttgggtttattggaaaggaattgacatacgaataataaaatgcaatatataattg 21128810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 419 - 498
Target Start/End: Original strand, 14164203 - 14164282
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||| |||| ||||||||||||||| |||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  14164203 attagatttttgatccgtgctccgttcgggtttattgtaaaaggattgacatatgaataataaaatgcaatatataattg 14164282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 415 - 494
Target Start/End: Complemental strand, 38110678 - 38110599
Alignment:
Q  415 gttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatata 494  Q
    |||||||||||| |||||| ||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||||||    
T  38110678 gttaattagatttttgacctgtgctccgttcgggtttattgtaaagggattgacatacaaataataaaatgcaatatata 38110599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 41511769 - 41511692
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  41511769 tagatttttgacccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 41511692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 496
Target Start/End: Complemental strand, 10410014 - 10409937
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||| ||||||||||||||  |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  10410014 attagatttttgacccgtgctccactcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 10409937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 19123587 - 19123510
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| |||||||||||||   ||||||||||||||||  |||||||||| ||||||||||||| ||||||||||||    
T  19123587 tagatttttgacccgtgctctactcggatttattgtaaagggattgacatacaaataataaaatgtaatatataattg 19123510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 496
Target Start/End: Original strand, 26522716 - 26522784
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    ||||| |||| |||| |||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  26522716 ttgactcgtgttccgctcggatttattgtaaagagattgacatacgaataataaaatgcaatatataat 26522784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 41092268 - 41092343
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| |||||| |||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  41092268 tagatttttgaccagtgctccgctcgggtttattgtaaagtgattgacatacgaataataaaatgcaatatataat 41092343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 431 - 496
Target Start/End: Original strand, 38004044 - 38004109
Alignment:
Q  431 acccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||||||| |||| ||||||||||| ||||| |||||| || ||||||||||||||||||||    
T  38004044 acccgtgctccgctcgggtttattgtaaagagatttacatatgaaaaataaaatgcaatatataat 38004109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 498
Target Start/End: Complemental strand, 16306196 - 16306114
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||| |||||| ||||||   ||||||||||| |||||||||||  ||||||||||  |||||||||||| ||||||||||||    
T  16306196 ttaactagatttttgacctccgctccgttcgggtttattgtaaaaggattgacatacgaataataaaatgtaatatataattg 16306114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 20563384 - 20563314
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||||||||| |||  |||||||||||  |||||||||   |||||||||||||||||||||||||    
T  20563384 ttgacccgtgctccgctcgagtttattgtaaagggattgacatgcgaataataaaatgcaatatataattg 20563314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 500
Target Start/End: Original strand, 9487349 - 9487410
Alignment:
Q  439 tccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||| ||| ||||||||||||   ||||||||| ||||||||||||||||||||||||||||    
T  9487349 tccgctcgaatttattgtaaaggaattgacatacaaataataaaatgcaatatataattgat 9487410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 16538285 - 16538208
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    |||| |||||| ||||| ||||||||| |||| ||||||||| |  ||||||||||  ||||||||||||||||||||    
T  16538285 ttaactagatttttgacgcgtgctccgctcgggtttattgtagagggattgacatacgaataataaaatgcaatatat 16538208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 7672744 - 7672819
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| |||| |||||||||| |||| ||||||||| |  ||||||||||  ||| |||||||||||||||||||    
T  7672744 tagatttttgatccgtgctccgctcgggtttattgtatagggattgacatacgaatgataaaatgcaatatataat 7672819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 23141458 - 23141383
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| | |||||||||||||  | | |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  23141458 tagattttagacccgtgctccgcacaggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 23141383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 43394566 - 43394641
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| |||| ||||| | || |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  43394566 tagatttttgatccgtgtttcgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 43394641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 500
Target Start/End: Complemental strand, 19322858 - 19322776
Alignment:
Q  418 aattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    ||||||||| ||||||||||||||  | |  |||||||||||   |||||||||   ||||||||||||||||||||||||||    
T  19322858 aattagatttttgacccgtgctccacttgagtttattgtaaaggaattgacatacggataataaaatgcaatatataattgat 19322776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 497
Target Start/End: Complemental strand, 7129262 - 7129214
Alignment:
Q  449 tttattgtaaatagattgacatataaataataaaatgcaatatataatt 497  Q
    |||||||||||  ||||||||||  ||||||||||||||||||||||||    
T  7129262 tttattgtaaagggattgacatacgaataataaaatgcaatatataatt 7129214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 500
Target Start/End: Original strand, 12441618 - 12441697
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||| ||||||||||||||| || | |||||||||||  ||||| ||||  |||||||||||  | ||||||||||||    
T  12441618 tagatttttgacccgtgctccgctcaggtttattgtaaagggattggcatacgaataataaaatatagtatataattgat 12441697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 493
Target Start/End: Complemental strand, 16529439 - 16529369
Alignment:
Q  423 gattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    |||| |||| |||||||||| |||  |||||||||||  ||||||||||  |||||| |||||||||||||    
T  16529439 gatttttgatccgtgctccgctcgagtttattgtaaagggattgacatacgaataatgaaatgcaatatat 16529369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 23777335 - 23777260
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||||||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  23777335 tagatttttgacccgtgctccgctcgggtttattgtaaagagattgacatatgaataataaaatgcaatatataat 23777260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 20876488 - 20876568
Alignment:
Q  418 aattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||| |||||||||| |||| ||||||||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  20876488 aattagatttttgacccgtgttccgctcggatttattgtaaaaggattgacatacgaataataaaatgcaatatataattg 20876568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 421 - 500
Target Start/End: Complemental strand, 51654822 - 51654743
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||| |||||| |||||||| |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  51654822 tagatttttgaccggtgctccgctcgggtttattgtaaagggattgacatacaaataataaaatgcaatatataattgat 51654743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 24366044 - 24365967
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    |||| |||||| ||||||||||||||| |||| ||||||||||| |||||||||||  ||||||||||||||||||||    
T  24366044 ttaactagatttttgacccgtgctccgctcgggtttattgtaaagagattgacatacgaataataaaatgcaatatat 24365967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 47501157 - 47501234
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  47501157 tagatttttgacccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 47501234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 860770 - 860693
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| || |||||||||||| || | ||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  860770 tagattttttacccgtgctccgctctggtttattgtaaagagattgacatacgaataataaaatgcaatatataattg 860693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 38886836 - 38886913
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| |||| |||||||||| |||  ||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  38886836 tagatttttgatccgtgctccgctcgagtttattgcaaagggattgacatataaataataaaatgcaatatataattg 38886913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 421 - 493
Target Start/End: Complemental strand, 11454869 - 11454797
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    |||||| |||| |||||||||| ||||||||||||||||  ||||||||||  ||||||||||||||||||||    
T  11454869 tagatttttgatccgtgctccgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatat 11454797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 37760969 - 37760894
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||||||| | |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  37760969 tagatttttgacccgtgctctgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 37760894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 11523399 - 11523322
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||| ||||||||| |||| || ||||||||  |||||| |||  |||||||||||||||||||||||||    
T  11523399 tagatttttgactcgtgctccgctcgggttgattgtaaagggattgatatacgaataataaaatgcaatatataattg 11523322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 498
Target Start/End: Original strand, 53046926 - 53046990
Alignment:
Q  434 cgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||| |||  ||||||||||||  |||||||||  |||||||||||||||||||||||||    
T  53046926 cgtgctccgctcgagtttattgtaaatgaattgacatacgaataataaaatgcaatatataattg 53046990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 496
Target Start/End: Original strand, 836846 - 836893
Alignment:
Q  449 tttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||    
T  836846 tttattgtaaagtgattgacatacaaataataaaatgcaatatataat 836893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 498
Target Start/End: Original strand, 25916696 - 25916770
Alignment:
Q  424 attgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||||||||||  ||  ||| |||||||| ||  ||||||||||| || ||||||||||||||||||||||    
T  25916696 attgttgacccgtgcgtcgcacgggtttattgttaaaggattgacatatgaaaaataaaatgcaatatataattg 25916770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 10267462 - 10267385
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||| || || || | |||||||||||  ||||||||||  |||||||||||| ||||||||||||    
T  10267462 tagatttttgacccgtacttcgctctggtttattgtaaagggattgacatacgaataataaaatgtaatatataattg 10267385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 36642740 - 36642815
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| |||| |||||||||| |||  ||| |||||||  ||||||||||   ||||||||||||||||||||||    
T  36642740 tagatttttgatccgtgctccgctcgagtttgttgtaaagggattgacatacggataataaaatgcaatatataat 36642815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 2730992 - 2730927
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaat 484  Q
    |||||||| ||||| ||||||||| |||| |||| ||||||  ||||||||||  |||||||||||    
T  2730992 attagatttttgacacgtgctccgctcgggtttaatgtaaagggattgacatacgaataataaaat 2730927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 493
Target Start/End: Original strand, 45514226 - 45514298
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    |||||| |||||||||| |||| |||  ||||| |||||  |||||| |||  ||||||||||||||||||||    
T  45514226 tagatttttgacccgtgttccgctcgtgtttatcgtaaaaggattgatatacgaataataaaatgcaatatat 45514298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 416 - 498
Target Start/End: Complemental strand, 21618901 - 21618819
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||| |||||| ||||||||||||||| |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  21618901 ttaactagatttttgacccgtgctccgctcgggtttattgtaaagggattgacatacaaataataaaatgcaatatataattg 21618819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 419 - 498
Target Start/End: Complemental strand, 39282490 - 39282411
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||| ||||||||||||||| || |||||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  39282490 attagatttttgacccgtgctccgctcagatttattgtaaagggattgacatacgaataataaaatgcaatatataattg 39282411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 47791502 - 47791425
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||| ||||| ||||||||||||||||   |||||||||| |||||||||||||||||||||||||    
T  47791502 tagatttttgacccgtactccgctcggatttattgtaaaggaattgacatatgaataataaaatgcaatatataattg 47791425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 500
Target Start/End: Original strand, 6537107 - 6537186
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||| |||| |||||||| | |||||||||||||||| || ||||||||  |||||||||||||||||||||||||||    
T  6537107 tagatttttgaaccgtgctctgctcggatttattgtaaagaggttgacatacgaataataaaatgcaatatataattgat 6537186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 12116161 - 12116086
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  12116161 tagatttttgacccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 12116086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 28949507 - 28949582
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  28949507 tagatttttgacccgtgctccgctcgggtttattgtaaaaggattgacatacgaataataaaatgcaatatataat 28949582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 496
Target Start/End: Complemental strand, 27296812 - 27296735
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||| ||||||||||||||| |||  |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  27296812 attagatttttgacccgtgctccgctcgagtttattgtaaagggattgacatacgaataataaaatgcaatatataat 27296735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 24595698 - 24595630
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    ||||| ||||||||| |||| ||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  24595698 ttgactcgtgctccgatcgggtttattgtaaagagattgacatatgcataataaaatgcaatatataat 24595630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 499
Target Start/End: Complemental strand, 52741112 - 52741032
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattga 499  Q
    |||||||| || ||||||| || |||||| |||||||||||  ||||||||||  ||||||||||||||||||||||||||    
T  52741112 attagattttttacccgtgttctgttcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattga 52741032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 500
Target Start/End: Complemental strand, 5429743 - 5429664
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||| ||||||||||||||| |||||||||| |||||  |||||||||   |||||||||||| ||||||||||||||    
T  5429743 tagatttttgacccgtgctccgctcggatttatggtaaagggattgacatgcgaataataaaatgtaatatataattgat 5429664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 430 - 493
Target Start/End: Complemental strand, 51114386 - 51114323
Alignment:
Q  430 gacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    ||||||||||||| |||||||||||||||| ||||||| |||  ||||||||||||||||||||    
T  51114386 gacccgtgctccgctcggatttattgtaaagagattgatatacgaataataaaatgcaatatat 51114323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 498
Target Start/End: Complemental strand, 21882869 - 21882787
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||| ||||||||||||||||||  ||   ||||||||||| ||  |||||||||| ||||||||||||||||||||||||||    
T  21882869 ttaactagattgttgacccgtgcgtcgcaaggatttattgttaagggattgacatacaaataataaaatgcaatatataattg 21882787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 1648352 - 1648275
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| |||||| |||||||| |||| |||||||||||  ||||| ||||  |||||||||||||||||||||||||    
T  1648352 tagatttttgacctgtgctccgctcgggtttattgtaaagggattggcatacgaataataaaatgcaatatataattg 1648275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 3226478 - 3226558
Alignment:
Q  418 aattagattgttgacccgtgctccg-ttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||| ||||||||||||||| ||||| |||||||||||  ||||||||||  |||||| ||||||||||||||||||    
T  3226478 aattagatttttgacccgtgctccgcttcgggtttattgtaaagggattgacatacgaataat-aaatgcaatatataattg 3226558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 16165190 - 16165267
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||| |||  |||||||||||  ||||||||||  |||||| ||||||||||||||||||    
T  16165190 tagatttttgacccgtgctccgctcgagtttattgtaaagggattgacatacgaataatgaaatgcaatatataattg 16165267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 498
Target Start/End: Complemental strand, 18913206 - 18913127
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||| |||| |||||||||| ||  ||||||||||||  |||||| |||  |||||||||||||||||||||||||    
T  18913206 attagatttttgatccgtgctccgctcaaatttattgtaaagggattgatatacgaataataaaatgcaatatataattg 18913127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 498
Target Start/End: Original strand, 25931328 - 25931411
Alignment:
Q  415 gttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||| |||||| ||||||||| ||||| |  | |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  25931328 gttaactagatttttgacccgtactccgcttaggtttattgtaaagtgattgacatacgaataataaaatgcaatatataattg 25931411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 48411583 - 48411658
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| || |||||||| ||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  48411583 tagatttttaacccgtgccccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 48411658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 500
Target Start/End: Original strand, 52407480 - 52407559
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||| ||||||||||||||| |||  |||||||||||  ||||| ||||  ||||||||||||||||||||| |||||    
T  52407480 tagatttttgacccgtgctccgctcgagtttattgtaaagggattgccatacgaataataaaatgcaatatatatttgat 52407559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 4099887 - 4099969
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||| |||||| || ||| |||||||| |||| |||||||||||  ||||||||||  ||||||||||| |||||||||||||    
T  4099887 ttaactagattttttaccagtgctccgctcgggtttattgtaaagggattgacatacgaataataaaattcaatatataattg 4099969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 44451666 - 44451743
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||| | || |||||| ||||  |||||| |||  |||||||||||||||||||||||||    
T  44451666 tagatttttgacccgtgctccgctagggtttattataaagggattgatatacgaataataaaatgcaatatataattg 44451743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 453 - 498
Target Start/End: Complemental strand, 21618744 - 21618699
Alignment:
Q  453 ttgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||    
T  21618744 ttgtaaagggattgacatacaaataataaaatgcaatatataattg 21618699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 44264610 - 44264533
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||| | || |||||||||||    || |||||  |||||||||||||||||||||||||    
T  44264610 tagatttttgacccgtgctccgctagggtttattgtaaaggatttaacatacgaataataaaatgcaatatataattg 44264533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 1155675 - 1155750
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||| | ||||||| |||  |||||| ||||  ||||||||||  |||||||||||||||||||||||    
T  1155675 tagatttttgactcatgctccgctcgagtttattataaagggattgacatacgaataataaaatgcaatatataat 1155750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 42491593 - 42491669
Alignment:
Q  421 tagattgttgacccgtgctccgttcggat--ttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||||||||| |||  |  ||||| |||| |||||||||||  |||||||||||||||||||||||    
T  42491593 tagatttttgacccgtgctccgctcgtgtgtttattttaaa-agattgacatacgaataataaaatgcaatatataat 42491669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 496
Target Start/End: Original strand, 44099254 - 44099300
Alignment:
Q  450 ttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    ||||||||||  ||||||||||  |||||||||||||||||||||||    
T  44099254 ttattgtaaagggattgacatacgaataataaaatgcaatatataat 44099300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 52688589 - 52688666
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||| |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  52688589 tagatttttgacccgtgctccgctcgggtttattgtaaagggattgacatacaaataataaaatgcaatatataattg 52688666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 37325384 - 37325309
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||||||||  |||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  37325384 tagatttttgacccgtgctccactcgggtttattgtaaatagattgacataagaataataaaatgcaatatataat 37325309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 28379295 - 28379372
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||  ||||||||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  28379295 tagatttttgacccgtgctccactcggatttattgtaaagggattgacatacgaataataaaatgcaatatataattg 28379372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 433 - 498
Target Start/End: Original strand, 47427788 - 47427853
Alignment:
Q  433 ccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  47427788 ccgtgctccgctcggatttattgtaaaaggattgacatatgaataataaaatgcaatatataattg 47427853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 430 - 497
Target Start/End: Complemental strand, 24051016 - 24050949
Alignment:
Q  430 gacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataatt 497  Q
    ||||||||||||| |||| ||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  24051016 gacccgtgctccgctcgggtttattgtaaaaagattgacatacgaataataaaatgcaatatataatt 24050949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 2479032 - 2479109
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||| | |||| |||||||||||  ||||||||||| ||| |||||||||||||||||||||    
T  2479032 tagatttttgacccgtgctctgctcgggtttattgtaaagggattgacatatgaatgataaaatgcaatatataattg 2479109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 496
Target Start/End: Original strand, 12795491 - 12795568
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||| |||||||||||| || |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  12795491 attagatttttgacccgtgcttcgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 12795568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 428 - 497
Target Start/End: Complemental strand, 44501013 - 44500944
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataatt 497  Q
    ||||||||||||||| |||| |||||||||||  ||||||||||  ||||||||||||||||||||||||    
T  44501013 ttgacccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataatt 44500944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 418 - 493
Target Start/End: Original strand, 32010479 - 32010554
Alignment:
Q  418 aattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    ||||||||| ||||||||||||||| | || |||||||||||  ||||||||||  ||||||||||||||||||||    
T  32010479 aattagatttttgacccgtgctccgcttgggtttattgtaaagggattgacatacgaataataaaatgcaatatat 32010554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 47769443 - 47769368
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| |||||  |||||||| ||||||||||||||||  ||||||||||  |||||||||||||||||||||||    
T  47769443 tagatttttgacttgtgctccgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatataat 47769368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 8396884 - 8396962
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatag-attgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||| |||| ||||||| ||| || |||||||||  |||||||||||||||||||||||||    
T  8396884 tagatttttgacccgtgctccgctcgggtttattgcaaaaaggattgacatacgaataataaaatgcaatatataattg 8396962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 498
Target Start/End: Complemental strand, 28813996 - 28813914
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||| |||||| ||||||||||||||| ||||||||||||| ||   |||||||||  |||| ||||||||||||||||||||    
T  28813996 ttaactagatttttgacccgtgctccgatcggatttattgtgaaggaattgacatacgaatattaaaatgcaatatataattg 28813914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 18000253 - 18000330
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| || |||||||||||| |||| |||||||||||  |||||||| |  |||||||||||||||||||||||||    
T  18000253 tagattttttacccgtgctccgctcgggtttattgtaaagggattgacaaacgaataataaaatgcaatatataattg 18000330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 431 - 496
Target Start/End: Original strand, 23952134 - 23952199
Alignment:
Q  431 acccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  23952134 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 23952199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 498
Target Start/End: Original strand, 54652894 - 54652959
Alignment:
Q  433 ccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||||||||  |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  54652894 ccgtgctccgttcgagtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 54652959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 493
Target Start/End: Complemental strand, 48076850 - 48076778
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    |||||| ||||||||||||||| |||  |||||||||||  ||||||||||  ||||||||||||||||||||    
T  48076850 tagatttttgacccgtgctccgctcgagtttattgtaaagggattgacatacgaataataaaatgcaatatat 48076778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 500
Target Start/End: Original strand, 53143038 - 53143094
Alignment:
Q  444 tcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  53143038 tcgggtttattgtaaagggattgacatacaaataataaaatgcaatatataattgat 53143094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 14989430 - 14989355
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| |||||||||||| ||||||| ||||| ||||| |||||||||||  |||| |||||| |||||||||||    
T  14989430 tagatttttgacccgtgcttcgttcgggtttatcgtaaagagattgacatacgaatactaaaattcaatatataat 14989355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 498
Target Start/End: Complemental strand, 22293747 - 22293680
Alignment:
Q  431 acccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||||||  | ||||||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  22293747 acccgtgctccaattggatttattgtaaagggattgacatacgaataataaaatgcaatatataattg 22293680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 2177899 - 2177829
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||||| |||| |||| |||||||||||  ||||| ||||  |||||||||||||||||||||||||    
T  2177899 ttgacccgtgttccgctcgggtttattgtaaagggattggcatacgaataataaaatgcaatatataattg 2177829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 498
Target Start/End: Complemental strand, 8119375 - 8119293
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||| |||||| || |||||||||| | |||| ||||||| |||  ||||||||||  |||||||||||||||||||||||||    
T  8119375 ttaactagattttttacccgtgctctgctcgggtttattgcaaagggattgacatacgaataataaaatgcaatatataattg 8119293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 496
Target Start/End: Original strand, 8478511 - 8478589
Alignment:
Q  418 aattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    ||||||||| ||||| ||||||||| |    |||||||||||  |||||||||| ||||||||||||||||||||||||    
T  8478511 aattagatttttgactcgtgctccgcttatgtttattgtaaagggattgacatacaaataataaaatgcaatatataat 8478589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 498
Target Start/End: Complemental strand, 29968656 - 29968575
Alignment:
Q  417 taattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||||| | ||| ||||||||| |||| ||||||||| |  ||||||||||  |||||| ||||||||||||||||||    
T  29968656 taattagattttagactcgtgctccgctcgggtttattgtatagggattgacatacgaataatgaaatgcaatatataattg 29968575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 497
Target Start/End: Complemental strand, 4942453 - 4942393
Alignment:
Q  437 gctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataatt 497  Q
    |||||| |||| |||||||||||  ||||||||||  ||||||||||||||||||||||||    
T  4942453 gctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataatt 4942393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 36639841 - 36639766
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||| || || |||| |||||||||||   |||||||||  |||||||||||||||||||||||    
T  36639841 tagatttttgacccgtacttcgctcgggtttattgtaaaggaattgacatacgaataataaaatgcaatatataat 36639766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 7822379 - 7822305
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataat----aaaatgcaatatataattg 498  Q
    ||||||||||||||| |||| |||||||||||  ||||||| || |||||||    |||||||||||||||||||    
T  7822379 ttgacccgtgctccgctcgggtttattgtaaagggattgacgtacaaataataaaaaaaatgcaatatataattg 7822305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 435 - 496
Target Start/End: Original strand, 21580846 - 21580907
Alignment:
Q  435 gtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||| ||||||||||||||||  ||||||| || |||||||||||||  |||||||||    
T  21580846 gtgctccgctcggatttattgtaaagggattgacttacaaataataaaatgtcatatataat 21580907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 52688741 - 52688786
Alignment:
Q  453 ttgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||    
T  52688741 ttgtaaagggattgacatacaaataataaaatgcaatatataattg 52688786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 493
Target Start/End: Complemental strand, 15465066 - 15464994
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    |||||| ||||||||||||||| |||| |||||||||||  | |||||| | ||||||| ||||||| |||||    
T  15465066 tagatttttgacccgtgctccgctcgggtttattgtaaagggcttgacagacaaataatcaaatgcattatat 15464994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 41850909 - 41850946
Alignment:
Q  463 attgacatataaataataaaatgcaatatataattgat 500  Q
    |||||||||  |||||||||||||||||||||||||||    
T  41850909 attgacatacgaataataaaatgcaatatataattgat 41850946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 419 - 498
Target Start/End: Complemental strand, 30206612 - 30206533
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||| ||||||| ||||||||||  ||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  30206612 attagatttttgacccatgctccgttcaaatttattgtaaagggattgacatacaaataataaaatgcaatatataattg 30206533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 3990893 - 3990820
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatata 494  Q
    |||||| ||||||||||||||| |||| ||||||||||| || ||||||||  |||||||||||||||||||||    
T  3990893 tagatttttgacccgtgctccgctcgggtttattgtaaagaggttgacataagaataataaaatgcaatatata 3990820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 9389587 - 9389510
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||| ||||||||| ||||||||||| ||||  ||||||||||  |||||||||||||||||||||||||    
T  9389587 tagatttttgactcgtgctccgctcggatttattataaaaggattgacatacgaataataaaatgcaatatataattg 9389510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 42046143 - 42046075
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    ||||||||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  42046143 ttgacccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 42046075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 428 - 498
Target Start/End: Original strand, 23959909 - 23959979
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||||||||||| || |||||| ||||  ||||||||||  |||||||||||||||||||||||||    
T  23959909 ttgacccgtgctccgtttgggtttattataaagggattgacatacgaataataaaatgcaatatataattg 23959979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 34948322 - 34948252
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||| ||||||| ||||||| |||||||||||| ||||||||||  |||||||||||| ||||||||||||    
T  34948322 ttgagccgtgcttcgttcgggtttattgtaaatggattgacatacgaataataaaatgtaatatataattg 34948252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 38111797 - 38111720
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| |||||| |||||| |||||  |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  38111797 tagatttttgacctgtgctctgttcgagtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 38111720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 421 - 500
Target Start/End: Original strand, 30436842 - 30436922
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaataga-ttgacatataaataataaaatgcaatatataattgat 500  Q
    |||||| ||||||||||||||| |||| |||||||||||  || ||||||||  ||||||||| |||||||||||||||||    
T  30436842 tagatttttgacccgtgctccgctcgggtttattgtaaagggatttgacatacgaataataaagtgcaatatataattgat 30436922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 32063303 - 32063229
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||| |||||||||| |||||||||||||||  |||| |||||  |||||||||||||||||||||||    
T  32063303 tagatttttgactcgtgctccgt-cggatttattgtaaagggattaacatacgaataataaaatgcaatatataat 32063229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 39921842 - 39921917
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||||||  | |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  39921842 tagatttttgacccgtgctttgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 39921917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 421 - 495
Target Start/End: Original strand, 27852984 - 27853058
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataa 495  Q
    |||||| ||||||||||||| | |||  ||||||||||| ||||| |||||  ||||||||||||||||||||||    
T  27852984 tagatttttgacccgtgctctgctcgagtttattgtaaagagattaacatacgaataataaaatgcaatatataa 27853058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 14683496 - 14683419
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||| | |||  |||||||||||  ||||||||||  ||||||||||||||||| |||||||    
T  14683496 tagatttttgacccgtgctctgctcgagtttattgtaaagggattgacatacgaataataaaatgcaatacataattg 14683419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 23086466 - 23086389
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||| ||||||| |||| |||| ||||||  ||||||||||   ||||||||||||||||||||||||    
T  23086466 tagatttttgacccatgctccgctcgggtttactgtaaagggattgacatacggataataaaatgcaatatataattg 23086389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 423 - 496
Target Start/End: Original strand, 37197296 - 37197369
Alignment:
Q  423 gattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||| ||||||| ||||||| |||| |||||||||||  |||||| |||  |||||||||||||||||||||||    
T  37197296 gatttttgacccatgctccgatcgggtttattgtaaagggattgatatacgaataataaaatgcaatatataat 37197369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 500
Target Start/End: Complemental strand, 35618099 - 35618027
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    ||||||| ||||||| |||| ||| |||||||   |||||||||  |||||||||||||||||||||||||||    
T  35618099 ttgacccatgctccgctcgggtttcttgtaaaggaattgacatacgaataataaaatgcaatatataattgat 35618027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 500
Target Start/End: Complemental strand, 1199935 - 1199856
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||| |||||  |||||| | |||| |||||||||||  ||||||||||| ||||||||||||||||||  |||||||    
T  1199935 tagatttttgacaagtgctctgctcgggtttattgtaaagtgattgacatatgaataataaaatgcaatatgcaattgat 1199856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 44434680 - 44434617
Alignment:
Q  435 gtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||| ||  |||||||||||  ||||||||||  ||||||||||||||| |||||||||    
T  44434680 gtgctccgtacgagtttattgtaaagcgattgacatacgaataataaaatgcaaaatataattg 44434617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 498
Target Start/End: Original strand, 603905 - 603941
Alignment:
Q  462 gattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||||  |||||||||||||||||||||||||    
T  603905 gattgacatacgaataataaaatgcaatatataattg 603941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 419 - 498
Target Start/End: Original strand, 17905476 - 17905555
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||| ||||||||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  17905476 attagatttttgacccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 17905555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 500
Target Start/End: Complemental strand, 34294691 - 34294610
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||||| ||||||||||||||| |||| |||||||||||   |||||| ||  |||||||||||||||||||||||||||    
T  34294691 attagatttttgacccgtgctccgctcgggtttattgtaaaggaattgacgtacgaataataaaatgcaatatataattgat 34294610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 9829408 - 9829333
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||||||||| |||| |||||||||||  |||||| |||  |||||||||||||||||||||||    
T  9829408 tagatttttgacccgtgctccgctcgggtttattgtaaagggattgatatacgaataataaaatgcaatatataat 9829333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 25068680 - 25068605
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| |||| |||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||    
T  25068680 tagatttttgatccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataat 25068605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 431 - 497
Target Start/End: Original strand, 4099565 - 4099631
Alignment:
Q  431 acccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataatt 497  Q
    |||||||||||| |||| |||||||||||  ||||||||||  ||||||||||||||||||||||||    
T  4099565 acccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataatt 4099631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 498
Target Start/End: Complemental strand, 17203665 - 17203583
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||| |||||| || |||||||||||  |||| |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  17203665 ttaactagattttttacccgtgctccactcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 17203583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 29202882 - 29202805
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||| |||| |||||||||||  ||||||||||   ||||||||||| ||||||||||||    
T  29202882 tagatttttgacccgtgctccgctcgggtttattgtaaagggattgacatacggataataaaatgtaatatataattg 29202805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 1394441 - 1394371
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||||||||  || | |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  1394441 ttgacccgtgctcctctcaggtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 1394371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 4810704 - 4810756
Alignment:
Q  444 tcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||| ||||||||||| |||||||||||  |||||||||||||||||||||||    
T  4810704 tcgggtttattgtaaagagattgacatacgaataataaaatgcaatatataat 4810756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 500
Target Start/End: Original strand, 32207949 - 32207987
Alignment:
Q  462 gattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  32207949 gattgacatagaaataataaaatgcaatatataattgat 32207987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 500
Target Start/End: Original strand, 26831804 - 26831860
Alignment:
Q  444 tcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||||||||||||| | ||| |||||  ||||||||||| |||||||||||||||    
T  26831804 tcggatttattgtaaaaaaattaacatacgaataataaaatacaatatataattgat 26831860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 421 - 500
Target Start/End: Complemental strand, 41327244 - 41327165
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||| || |||||||||||| ||||||||||||||||  ||||||||||  |||||||||||||||||||||||||||    
T  41327244 tagatttttaacccgtgctccgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatataattgat 41327165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 44543362 - 44543437
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||||||||| |||| |||||||||||| ||||||||||  |||||||||||||||||||||||    
T  44543362 tagatttttgacccgtgctccgctcgggtttattgtaaatggattgacatacgaataataaaatgcaatatataat 44543437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 833282 - 833359
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  833282 tagatttttgacccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 833359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 2131974 - 2132051
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  2131974 tagatttttgacccgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 2132051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 417 - 498
Target Start/End: Complemental strand, 11658331 - 11658250
Alignment:
Q  417 taattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||||| ||||||||||||||| |||| |||||||||||   |||||||||  |||||||||||||||||||||||||    
T  11658331 taattagatttttgacccgtgctccgctcgggtttattgtaaaggcattgacatacgaataataaaatgcaatatataattg 11658250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 17370756 - 17370679
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||||| ||||| |||||||||||||||| |||||||||||  ||||||||||| |||||||||||||    
T  17370756 tagatttttgacccgtactccgctcggatttattgtaaagagattgacatacgaataataaaatacaatatataattg 17370679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 500
Target Start/End: Original strand, 14335829 - 14335908
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||| ||||| ||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||||||    
T  14335829 tagatttttgactcgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattgat 14335908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 421 - 495
Target Start/End: Complemental strand, 11736936 - 11736862
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataa 495  Q
    |||||| |||| |||||||||| ||||||||||||||||  ||||||||||  ||||||||||||||||||||||    
T  11736936 tagatttttgatccgtgctccgctcggatttattgtaaagggattgacatacgaataataaaatgcaatatataa 11736862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 37130761 - 37130838
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||| ||||||||| |||| |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  37130761 tagatttttgactcgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgcaatatataattg 37130838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 628062 - 627994
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||  |||||||||||| ||||||||||    
T  628062 ttgactcgtgctccgttcggatttattgtaaagagattgagatacgaataataaaatgtaatatataat 627994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 10128784 - 10128861
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| |||||| |||||||| |||| |||||||||||  ||||||||||  |||||||||||| ||||||||||||    
T  10128784 tagatttttgacctgtgctccgctcgggtttattgtaaagggattgacatacgaataataaaatgaaatatataattg 10128861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 20639781 - 20639858
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| || |||||||||||| |||| |||||||||||  |||||||| |  |||||||||||||||||||||||||    
T  20639781 tagattttttacccgtgctccgctcgggtttattgtaaagggattgacaaacgaataataaaatgcaatatataattg 20639858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 498
Target Start/End: Original strand, 8430564 - 8430642
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||| ||||| ||||||||| | || |||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  8430564 attagatttttgactcgtgctccgcttgggtttattgtaaag-gattgacatacgaataataaaatgcaatatataattg 8430642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 12896042 - 12896117
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||| ||||||| |||| ||||| |||||  ||||||||||  |||||||||||||||||||||||    
T  12896042 tagatttttgacccatgctccgctcgggtttatcgtaaagggattgacatacgaataataaaatgcaatatataat 12896117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 498
Target Start/End: Original strand, 28611552 - 28611601
Alignment:
Q  449 tttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  28611552 tttattgtaaagggattgacatacaaataataaaatgcaatatataattg 28611601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 29550818 - 29550743
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| |||||| |||||||| |||  |||||||||||| ||||||||||  ||||||||||| || ||||||||    
T  29550818 tagatttttgacctgtgctccgctcgagtttattgtaaatggattgacatacgaataataaaatacagtatataat 29550743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 433 - 496
Target Start/End: Complemental strand, 44257125 - 44257062
Alignment:
Q  433 ccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||||| ||  |||||||||||| ||||||| |||  |||||||||||||||||||||||    
T  44257125 ccgtgctccgctcaaatttattgtaaagagattgatatacgaataataaaatgcaatatataat 44257062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 27351509 - 27351586
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    ||||||||||||||||||  ||  ||| |||||||  ||  ||||||||||  |||||||||||||||||||||||||    
T  27351509 tagattgttgacccgtgcgtcgcacgggtttattgataagggattgacatacgaataataaaatgcaatatataattg 27351586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 498
Target Start/End: Original strand, 30556867 - 30556916
Alignment:
Q  449 tttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||||| ||  |||||| ||||||||||||||||||||||||||||||    
T  30556867 tttattgttaaaggattgaaatataaataataaaatgcaatatataattg 30556916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 500
Target Start/End: Complemental strand, 11131799 - 11131748
Alignment:
Q  449 tttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    |||||||| || ||||||||| |  |||||||||||||||||||||||||||    
T  11131799 tttattgttaagagattgacaaacgaataataaaatgcaatatataattgat 11131748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 496
Target Start/End: Complemental strand, 12898723 - 12898648
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||| ||||||||||||||| ||   |||||||||||  |||||||||   ||||||||||| |||||||||||    
T  12898723 tagatttttgacccgtgctccgctcaagtttattgtaaagggattgacatgcgaataataaaatacaatatataat 12898648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 41939139 - 41939104
Alignment:
Q  63 cataatatatgtaagatttgagattcaaactccgac 98  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41939139 cataatatatgtaaggtttgagattcaaactccgac 41939104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 496
Target Start/End: Complemental strand, 6348554 - 6348486
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||| |||||| |||  |||||||||||  |||||| |||  || ||||||||||||||||||||    
T  6348554 ttgacccgcgctccgctcgagtttattgtaaagggattgatatacgaaaaataaaatgcaatatataat 6348486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 428 - 500
Target Start/End: Original strand, 12138 - 12210
Alignment:
Q  428 ttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattgat 500  Q
    ||||||||||||||| |||| |||||||||||  ||||||||||| |||||||||||||||||| ||||||||    
T  12138 ttgacccgtgctccgctcgggtttattgtaaagtgattgacatatgaataataaaatgcaatatgtaattgat 12210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 163381 - 163461
Alignment:
Q  416 ttaattagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||| |||||| ||||||||||||||  |||| |||||||||||  ||||||||||  |||||||||||||||||| ||||    
T  163381 ttaactagatttttgacccgtgctccactcgggtttattgtaaagggattgacatacgaataataaaatgcaatatgtaat 163461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 496
Target Start/End: Complemental strand, 13749 - 13672
Alignment:
Q  419 attagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataat 496  Q
    |||||||| ||||||||||||| | |||| |||| ||||||  |||||||||| | ||||||||||||| ||||||||    
T  13749 attagatttttgacccgtgctcagctcgggtttaatgtaaagggattgacatacagataataaaatgcactatataat 13672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 500
Target Start/End: Original strand, 12013 - 12051
Alignment:
Q  462 gattgacatataaataataaaatgcaatatataattgat 500  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  12013 gattgacatatgaataataaaatgcaatatataattgat 12051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 498
Target Start/End: Complemental strand, 105066 - 104989
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| |||||||||||| || |||| |||||| ||||  |||||| |||  |||||||||||||| ||||||||||    
T  105066 tagatttttgacccgtgcttcgctcgggtttattataaagggattgagatacgaataataaaatgcattatataattg 104989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 1329 - 1407
Alignment:
Q  416 ttaattagattgttga-cccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatat 493  Q
    |||| |||||| |||| ||||||||||| |||| |||||||||||  |||||||| |  ||||||||||| ||||||||    
T  1329 ttaactagatttttgatcccgtgctccgctcgggtttattgtaaagggattgacaaacgaataataaaatacaatatat 1407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 70582 - 70659
Alignment:
Q  421 tagattgttgacccgtgctccgttcggatttattgtaaatagattgacatataaataataaaatgcaatatataattg 498  Q
    |||||| ||||||| |||| || |||| |||||||| ||  |||||| |||  |||||||||||||| ||||||||||    
T  70582 tagatttttgacccatgcttcgctcgggtttattgttaagggattgagatacgaataataaaatgcattatataattg 70659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University