View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12515_low_34 (Length: 255)
Name: NF12515_low_34
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 421145 - 420908
Alignment:
| Q |
1 |
cattcttcttgttgcaacgtgattttaatttcatttcatttgacaggtacttattttttctagagagacatgttggactatgaatggggtaacccatcaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
421145 |
cattcttcttgttacaacgtgattttaatttcatttcatttgacaggtactt--tttttctagagagacatgttggactatgaatggggtaacccatcaa |
421048 |
T |
|
| Q |
101 |
acatcatgcttaccggaaatgaagacaactccggtgcagcagccaccgatcaagcccaccgtcaaatcttcgaccactatgcttctcaagctatgttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
421047 |
acatcatgcttaccggaaatgaagacaactccggtgcagcagccaccgatcaagcccaccgtcaaatcttcgaccactatgcttctcaagctatgttatc |
420948 |
T |
|
| Q |
201 |
cgacaactaccttaacggacctggtggtggacccaccatc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
420947 |
cgacaactaccttaacggacctggtggtggacccaccatc |
420908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University