View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_35 (Length: 251)
Name: NF12515_low_35
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_35 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 63521 - 63763
Alignment:
| Q |
7 |
gagagatgaagatcacacttacgatatagccgaataattattctttttccttccaatcaaattaatcaaaacatgttattggctatataataatgtacat |
106 |
Q |
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| T |
63521 |
gagaaatgaagatcacacttacgatatagccgaataattattctttttccttccaatcaaattaatcaaaacatgttattggctatataataatgtacat |
63620 |
T |
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| Q |
107 |
tg---nnnnnnnnnccaccaatatcatatttttcaatcatcatgacaatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaact |
203 |
Q |
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| T |
63621 |
tgaaaaaaaaaaaaccaccaacatcatatttttcaatcatcatgaccatccaaaatcgtatcaagagaaacacaaacatcactagaaacaac-acaaact |
63719 |
T |
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| Q |
204 |
taacaatttgtctccacatccccatcttaacaacaaatcccaccatcc |
251 |
Q |
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| T |
63720 |
taacaatttgactccacatcccc----taacaacaaatcccaccatcc |
63763 |
T |
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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 30302273 - 30302187
Alignment:
| Q |
118 |
ccaccaatatcatatttttcaatcatcatgacaatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaactt |
204 |
Q |
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| T |
30302273 |
ccaccaacatcatatttttcaatcatcatgactatccaaaatcgtatcaagagaaacacaaacatcactaacagcaacaacacactt |
30302187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 30301259 - 30301180
Alignment:
| Q |
150 |
aatccaaaatcgtatcaagagaaacacaaacatcactagaaacaacaacaaacttaacaatttgtctccacatccccatc |
229 |
Q |
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| T |
30301259 |
aatccaaaatcttatcaaaagaaacactaacatctctagaaacaacaatacatctaacaattggtctccacatccccatc |
30301180 |
T |
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