View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_38 (Length: 242)
Name: NF12515_low_38
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 27 - 231
Target Start/End: Complemental strand, 54879845 - 54879637
Alignment:
| Q |
27 |
cgctaaacctttttgaactcgttgtagaatattcacatcctctaaaactaaaaagctaaaagtatcaaacataaatggtattaaaacatgtcgattgtca |
126 |
Q |
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| T |
54879845 |
cgctaaacctttttgaactcgttgtagaatattcacatcctctaacactaaaaagtcaaaagtatcaaacataaatgatattaaaacatgttgattgtca |
54879746 |
T |
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| Q |
127 |
----aagctcactttctcgtatttgaacatttttcttaaaattgtttctagaggtgttgtctaatagtaaatgctctgatactgaaaaaacctcattaaa |
222 |
Q |
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| T |
54879745 |
gtcaaatcttactttctcatatttgaacatttttcttaaaattgtttctagaggtgttgtctaatagtaaatgctctgatactgaaaaaacctcattaaa |
54879646 |
T |
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| Q |
223 |
tttgttcat |
231 |
Q |
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| T |
54879645 |
tttgttcat |
54879637 |
T |
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