View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_39 (Length: 240)
Name: NF12515_low_39
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 38014483 - 38014700
Alignment:
| Q |
4 |
ttggttccgaaggccagacgaagggtacatcacacctgaaatatccctttctctccagctgtaatacttctccacgcttaagattttgcatattggagtc |
103 |
Q |
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| T |
38014483 |
ttggtttcgaaggccggacgaagggtacatcacacctaaaatatccctttctctccagctgcaatacttctccacgcttaagatttcgcatattggagtc |
38014582 |
T |
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| Q |
104 |
tccatatgctagagtctccttttttgtgcaagggttaagcacatcaacgaaattctctcctttctcaagctgcaaacaaagcaaataaaaacataaacag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||| ||||||| |
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| T |
38014583 |
tccatatgctagagtctccttttttgtgcaagggttaagcacatcagtgaaatcctctccttcctcaagctgcaaacaaagcaaatataaacttaaacag |
38014682 |
T |
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| Q |
204 |
ggaagcaagcaggtttga |
221 |
Q |
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|||||||||||||||||| |
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| T |
38014683 |
ggaagcaagcaggtttga |
38014700 |
T |
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