View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_4 (Length: 511)
Name: NF12515_low_4
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 16 - 492
Target Start/End: Complemental strand, 23853420 - 23852944
Alignment:
| Q |
16 |
ggacatcaacatagataccaattaactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagat |
115 |
Q |
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| T |
23853420 |
ggacatcaacatagataccaattaactagagttcaattacatagagactcaattgtgtttgaatataaggtgtccccaaatataaataagtgctcaagat |
23853321 |
T |
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| Q |
116 |
atgcacggaaatagaacatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggtt |
215 |
Q |
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| T |
23853320 |
atgcacggaaatagaacatcaacatgactcgttccaaatataaaaatgaacaaatgaaaggacataataaaatgagatgcctatttaagttgtgttggtt |
23853221 |
T |
|
| Q |
216 |
gtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttca |
315 |
Q |
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| T |
23853220 |
gtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttca |
23853121 |
T |
|
| Q |
316 |
cttttgagtacatatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagct |
415 |
Q |
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| T |
23853120 |
cttttgagtacatatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagct |
23853021 |
T |
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| Q |
416 |
ttaatgatccattatttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaac |
492 |
Q |
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| T |
23853020 |
ttaatgatccattatttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaac |
23852944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 195 - 492
Target Start/End: Complemental strand, 23752535 - 23752243
Alignment:
| Q |
195 |
cctatttaagttgtgttggttgtgtcacggttgtgttgtgcccacccgacttgcagctctgcttcagtctcttcccttaaatatggatagaaaccaaagt |
294 |
Q |
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| T |
23752535 |
cctatttaagttgtgttggttgagtccc-----cgttgtgcccacccaacttacagcgttgcttcattcacttccctcaaatatgcatagaaaccaaagt |
23752441 |
T |
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| Q |
295 |
tttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcatttggttgcatggaacaagagaggaaagctc |
394 |
Q |
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| T |
23752440 |
tatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcatttggttgcatagaacaagagaggcaagcac |
23752341 |
T |
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| Q |
395 |
ttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttgtaaatggaaaggtataagttgcagcaac |
492 |
Q |
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| T |
23752340 |
ttcttgaactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttgtaaatggaaaggtataagttgcagcaac |
23752243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 492
Target Start/End: Complemental strand, 22619863 - 22619636
Alignment:
| Q |
265 |
cttcccttaaatatggatagaaaccaaagttttgctttttcagttgtttcacttttgagtacatatttcatgttactatgttcctgtggccattcatcat |
364 |
Q |
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||||||| ||||||| ||||||||||||||| ||||||| |||||||| |||||||| |||| |||||||||||||||||| || |||||||||||| |
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| T |
22619863 |
cttccctcaaatatgcatagaaaccaaagttatgcttttgttgttgtttcccttttgagcacatgtttcatgttactatgttctagtagccattcatcat |
22619764 |
T |
|
| Q |
365 |
ttggttgcatggaacaagagaggaaagctcttcttgaaatcaaaggaagctttaatgatccattatttagactttcctcttggaaaggaaatgactgttg |
464 |
Q |
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| T |
22619763 |
ttggttgcttagaacaagagaggcaagctcttttagcactcaaaggaagctttaatgatacatcattaagactttcctcttgggaaggaaatgaatgttg |
22619664 |
T |
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| Q |
465 |
taaatggaaaggtataagttgcagcaac |
492 |
Q |
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| T |
22619663 |
taaatggaaaggtataagttgcagcaac |
22619636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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