View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12515_low_41 (Length: 239)

Name: NF12515_low_41
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12515_low_41
NF12515_low_41
[»] chr8 (13 HSPs)
chr8 (3-223)||(18095492-18095712)
chr8 (27-198)||(18140219-18140390)
chr8 (67-199)||(18081311-18081443)
chr8 (50-168)||(12723979-12724097)
chr8 (60-192)||(12721458-12721590)
chr8 (50-181)||(12646201-12646332)
chr8 (50-181)||(12651333-12651464)
chr8 (50-171)||(12704847-12704968)
chr8 (51-171)||(12712662-12712782)
chr8 (50-141)||(13025664-13025755)
chr8 (60-181)||(27183072-27183193)
chr8 (64-189)||(37829918-37830043)
chr8 (60-110)||(27231092-27231142)
[»] chr1 (3 HSPs)
chr1 (50-191)||(17747250-17747391)
chr1 (64-111)||(40399723-40399770)
chr1 (61-189)||(22536067-22536195)
[»] chr4 (2 HSPs)
chr4 (50-160)||(4875974-4876084)
chr4 (50-175)||(1326367-1326492)
[»] chr3 (1 HSPs)
chr3 (50-160)||(5387566-5387676)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 18095712 - 18095492
Alignment:
Q  3 aatacgaggagacgtgtttcggcatcgtcatcgtgtttggatttgaggaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagacc 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  18095712 aataagaggagacgtgtttcggcatcgtcatcgtgtttggatttgaggaaattggtgcggaacatgttcatgaaattagggttttggaaaagaagtgacc 18095613  T
Q  103 atgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatttggagagaatggagaaagcaatgtcttcgtgaatgtgagaatcagaagaaca 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18095612 atgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatttggagagaatggagaaagcaatgtcttcgtgaatgtgagaatcagaagaaga 18095513  T
Q  203 actaaccttattccttgaagc 223  Q
    |||||||||||||||||||||    
T  18095512 actaaccttattccttgaagc 18095492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 18140219 - 18140390
Alignment:
Q  27 tcgtcatcgtgtttggatttgaggaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaac 126  Q
    ||||||| |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||| ||||    
T  18140219 tcgtcatggtgtttggaaatgaggaaattggtgcggaacatgttcatgaaattagggttttggaataaaagtgaccatgattttttagcacaggtaaaac 18140318  T
Q  127 gtttgagtgatttgagaggtaatttggagagaatggagaaagcaatgtcttcgtgaatgtgagaatcagaag 198  Q
    ||||||| ||||| | ||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  18140319 gtttgagagatttaataggcaatttagagagaatggagaaagcaatgtcatcgtgaatgtgagaaacagaag 18140390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 18081443 - 18081311
Alignment:
Q  67 tgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatttggagagaatggagaa 166  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||| ||||||  ||||||||| || |||||||||||    
T  18081443 tgttcatgaaattagggttttgaaaaagaagagaccatgattttttagcacaagtgaaacgtgtgagagatttgtaaggtaatttagaaagaatggagaa 18081344  T
Q  167 agcaatgtcttcgtgaatgtgagaatcagaaga 199  Q
    ||||||||| |||||||||||||||||||||||    
T  18081343 agcaatgtcatcgtgaatgtgagaatcagaaga 18081311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 12724097 - 12723979
Alignment:
Q  50 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 149  Q
    ||||||||| |||||||||||||||||| ||| ||||||||| | ||||||||||||||| | |||||| ||||||||| |||| ||||| ||||| |||    
T  12724097 gaaattggtgcggaacatgttcatgaaaatagagttttggaacaaaagagaccatgatttttgagcacaagtgaaacgtgtgagagatttaagaggcaat 12723998  T
Q  150 ttggagagaatggagaaag 168  Q
    ||||||||||| |||||||    
T  12723997 ttggagagaattgagaaag 12723979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 12721590 - 12721458
Alignment:
Q  60 cggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatttggagagaa 159  Q
    |||||||| ||||||||  ||||||||||||| | |||| |||||||||| ||| |||| ||||| |||||||| ||||| || || |||||||||||||    
T  12721590 cggaacatattcatgaatatagggttttggaataaaagaaaccatgattttttaacacaagtgaatcgtttgagagatttaagcggcaatttggagagaa 12721491  T
Q  160 tggagaaagcaatgtcttcgtgaatgtgagaat 192  Q
    | |||||||||||||| ||||| ||||||||||    
T  12721490 tagagaaagcaatgtcgtcgtgtatgtgagaat 12721458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 12646332 - 12646201
Alignment:
Q  50 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 149  Q
    |||||| || ||||||| ||||||||||| ||||||||| || | ||||||||||| ||| |||||||||||||| | | |||| ||||| ||||| |||    
T  12646332 gaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagaggcaat 12646233  T
Q  150 ttggagagaatggagaaagcaatgtcttcgtg 181  Q
    |||||||| || |||| ||||||||| |||||    
T  12646232 ttggagagtattgagagagcaatgtcatcgtg 12646201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 12651464 - 12651333
Alignment:
Q  50 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 149  Q
    |||||| || ||||||| ||||||||||| ||||||||| || | |||||||||| |||| |||||||||||||  ||| |||| ||||| ||||| |||    
T  12651464 gaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagaccattatttcttagcacaggtgagtcgtgtgagagatttaagaggcaat 12651365  T
Q  150 ttggagagaatggagaaagcaatgtcttcgtg 181  Q
    |||||||| || |||||||||| ||| |||||    
T  12651364 ttggagagtatagagaaagcaacgtcatcgtg 12651333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 12704968 - 12704847
Alignment:
Q  50 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 149  Q
    ||||||||| |||||||||||||| |||| |||| |||| || | ||| ||  ||||||| ||| |||| ||||| |||||||| ||||| ||||| |||    
T  12704968 gaaattggttcggaacatgttcataaaatcagggctttgaaataaaagggaaaatgattttttaacacatgtgaatcgtttgagggatttaagaggcaat 12704869  T
Q  150 ttggagagaatggagaaagcaa 171  Q
    ||||| ||||| ||||||||||    
T  12704868 ttggaaagaatagagaaagcaa 12704847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 12712662 - 12712782
Alignment:
Q  51 aaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatt 150  Q
    ||||||||||| ||||||||||| |||| |||| |||| || | ||| ||  ||||||| ||| |||| ||||| |||||||||||||||||||| | ||    
T  12712662 aaattggtacgaaacatgttcataaaatcagggctttgaaataaaagggaaaatgattttttaacacatgtgaatcgtttgagtgatttgagaggcagtt 12712761  T
Q  151 tggagagaatggagaaagcaa 171  Q
    |||| ||||| || |||||||    
T  12712762 tggaaagaatagacaaagcaa 12712782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 13025664 - 13025755
Alignment:
Q  50 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttga 141  Q
    ||||||||| || ||||||||||||||| |  ||||||  | |||||||||||||||||| |||||||| |||||||||  ||| |||||||    
T  13025664 gaaattggtgcgaaacatgttcatgaaagtgtggttttcaagaagaagagaccatgattttttagcacaagtgaaacgtgcgagggatttga 13025755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 27183193 - 27183072
Alignment:
Q  60 cggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatttggagagaa 159  Q
    ||||||| ||| ||||||||||||||||| || | ||||||||||||||||  | |||| || || || ||||| ||||| | ||| | ||| |||||||    
T  27183193 cggaacaagttgatgaaattagggttttgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagatttaatagggagtttagagagaa 27183094  T
Q  160 tggagaaagcaatgtcttcgtg 181  Q
    | || ||||||||||| |||||    
T  27183093 tagataaagcaatgtcatcgtg 27183072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 37830043 - 37829918
Alignment:
Q  64 acatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatttggagagaatgga 163  Q
    |||| |||||||||  |||||||||||| | ||||||| ||| ||| | | | || || |||||| |||| ||||| ||||| ||||||||||||||  |    
T  37830043 acatattcatgaaaaaagggttttggaataaaagagacaatggtttttgaacgcaagtaaaacgtgtgagggatttaagaggcaatttggagagaataaa 37829944  T
Q  164 gaaagcaatgtcttcgtgaatgtgag 189  Q
    ||  |||||||| ||||| |||||||    
T  37829943 gattgcaatgtcatcgtgtatgtgag 37829918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 27231092 - 27231142
Alignment:
Q  60 cggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttg 110  Q
    ||||||| ||| ||||||||||||||||| || | ||||||||||||||||    
T  27231092 cggaacaagttgatgaaattagggttttgaaataaaagagaccatgatttg 27231142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 17747391 - 17747250
Alignment:
Q  50 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 149  Q
    ||||||| | || ||||| |||||||||| | | ||||||||||||| |||||||||||| |||||||| || || | | |||| ||||| | ||| | |    
T  17747391 gaaattgtttcgaaacatattcatgaaataaagcttttggaaaagaaaagaccatgattttttagcacatgtaaatcatgtgagagatttaataggcagt 17747292  T
Q  150 ttggagagaatggagaaagcaatgtcttcgtgaatgtgagaa 191  Q
    ||||||||||| |||||||||||||| ||||| |||| ||||    
T  17747291 ttggagagaatagagaaagcaatgtcgtcgtgtatgttagaa 17747250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 40399723 - 40399770
Alignment:
Q  64 acatgttcatgaaattagggttttggaaaagaagagaccatgatttgt 111  Q
    |||||||||||||||||||||||| ||| | ||||| |||||||||||    
T  40399723 acatgttcatgaaattagggttttcgaataaaagagtccatgatttgt 40399770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 22536067 - 22536195
Alignment:
Q  61 ggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaatttggagagaat 160  Q
    ||||||||||||  |||  |||||||| ||| | ||||||||||||||| | | | || || || |||  ||| ||||| ||||| ||||||||||||||    
T  22536067 ggaacatgttcacaaaaaaagggttttcgaataaaagagaccatgatttttgaacgcaagtaaatcgtgcgagggatttaagaggcaatttggagagaat 22536166  T
Q  161 ggagaaagcaatgtcttcgtgaatgtgag 189  Q
      |||  |||||||| ||||| |||||||    
T  22536167 aaagactgcaatgtcgtcgtgtatgtgag 22536195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 4876084 - 4875974
Alignment:
Q  50 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 149  Q
    ||||||||| ||||||||||||||||||||||||||||| || | ||||||| ||||||||   ||||| || || |  ||||| |||| ||| ||||||    
T  4876084 gaaattggtgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttggaggcacatgtaaatcaattgagagattggaggggtaat 4875985  T
Q  150 ttggagagaat 160  Q
    ||||| |||||    
T  4875984 ttggaaagaat 4875974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 1326492 - 1326367
Alignment:
Q  50 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 149  Q
    ||||||||| || |||||   |||||||| ||||||||| || | ||||||| ||| ||||   ||||| || || |||||||| |||||||||||||||    
T  1326492 gaaattggtgcgaaacataggcatgaaataagggttttgaaataaaagagactatggtttgcatgcacacgtaaatcgtttgagagatttgagaggtaat 1326393  T
Q  150 ttggagagaatggagaaagcaatgtc 175  Q
    ||||| ||||| ||||| | ||||||    
T  1326392 ttggaaagaatagagaaggaaatgtc 1326367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 5387676 - 5387566
Alignment:
Q  50 gaaattggtacggaacatgttcatgaaattagggttttggaaaagaagagaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 149  Q
    ||||||||| |||||||  | |||||||||||||||||| || | ||||||||| ||||||   |||||||| || || ||||| |||||||| ||||||    
T  5387676 gaaattggtgcggaacaattgcatgaaattagggttttgaaataaaagagaccaagatttggaggcacaggtaaatcgattgagagatttgaggggtaat 5387577  T
Q  150 ttggagagaat 160  Q
    ||||| |||||    
T  5387576 ttggaaagaat 5387566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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