View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_43 (Length: 236)
Name: NF12515_low_43
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 55652396 - 55652185
Alignment:
| Q |
18 |
ccctttataacaacattagaggatccatttgccttctttggagataactcatttccattttttcttttacattttctcaaatgtccacatacannnnnnn |
117 |
Q |
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| T |
55652396 |
ccctttattacaacattagaggatccatttgccttctttggagataactcatttccattttttcttttacattttctcaaatgtccacatacattttttt |
55652297 |
T |
|
| Q |
118 |
nnaggaataaatgtccacatacatctctacctttaaatatatatannnnnnnaaattctttttctccat-ctttaaatgaatggggaaaattgcaataga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
55652296 |
ttaggaataaatgtccacatacatctctacctttaaatatatatatttttttaaattctttttctccatcctttaaatgaatggggaaaattgcaacaga |
55652197 |
T |
|
| Q |
217 |
ctttcatctcac |
228 |
Q |
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||||||| |||| |
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| T |
55652196 |
ctttcatgtcac |
55652185 |
T |
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