View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12515_low_45 (Length: 223)

Name: NF12515_low_45
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12515_low_45
NF12515_low_45
[»] chr3 (7 HSPs)
chr3 (1-223)||(9992950-9993171)
chr3 (1-223)||(6500020-6500235)
chr3 (91-164)||(38195799-38195872)
chr3 (91-164)||(28323936-28324010)
chr3 (133-179)||(37875999-37876045)
chr3 (91-164)||(39373128-39373202)
chr3 (91-164)||(12248565-12248637)
[»] scaffold0105 (1 HSPs)
scaffold0105 (91-164)||(46717-46790)
[»] chr4 (3 HSPs)
chr4 (91-164)||(18762203-18762276)
chr4 (91-164)||(27657691-27657765)
chr4 (91-164)||(24641358-24641432)
[»] chr2 (4 HSPs)
chr2 (91-164)||(27222430-27222503)
chr2 (91-164)||(35254042-35254116)
chr2 (91-164)||(35264651-35264725)
chr2 (133-179)||(29245229-29245275)
[»] chr5 (5 HSPs)
chr5 (1-164)||(31447662-31447824)
chr5 (133-181)||(5291511-5291559)
chr5 (133-180)||(24588992-24589039)
chr5 (133-180)||(30228384-30228431)
chr5 (133-180)||(42052687-42052734)
[»] scaffold0906 (1 HSPs)
scaffold0906 (91-164)||(3666-3739)
[»] chr1 (4 HSPs)
chr1 (91-164)||(3172610-3172685)
chr1 (91-164)||(35400278-35400352)
chr1 (91-164)||(35647803-35647877)
chr1 (133-180)||(36246227-36246274)
[»] chr6 (2 HSPs)
chr6 (1-185)||(27373773-27373951)
chr6 (1-185)||(27464126-27464304)
[»] chr8 (3 HSPs)
chr8 (91-164)||(13687733-13687807)
chr8 (133-180)||(29077722-29077769)
chr8 (133-179)||(19129774-19129820)
[»] chr7 (7 HSPs)
chr7 (133-181)||(5686558-5686606)
chr7 (133-181)||(9434263-9434311)
chr7 (91-164)||(11006242-11006317)
chr7 (133-181)||(21002246-21002294)
chr7 (133-180)||(9086248-9086295)
chr7 (133-179)||(5711302-5711348)
chr7 (1-103)||(19993120-19993220)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9992950 - 9993171
Alignment:
Q  1 aaccttagttgcacacccaacacctttagcttgtttttacttgtgttctaaatt-atcagtagctttgcctctgtatctctatttgattaatataaatat 99  Q
    |||||||||||||||||||||||  |||||||||||||||||  |||||||||| ||||||||||||||||||||||||  ||||| | |||||||||||    
T  9992950 aaccttagttgcacacccaacactcttagcttgtttttactttggttctaaatttatcagtagctttgcctctgtatcttaatttg-tcaatataaatat 9993048  T
Q  100 tatcattgtttctgaaaatttaagttctacagttttaactctgatgatatttattgtttttaatga-tatttgccctgatacattgtttgtatgttttta 198  Q
    ||||||| |||||||||| | | ||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||     
T  9993049 tatcattatttctgaaaaat-atgttctacagttttaactctaatgatatttattgtttttaatgattatttgctctgatacattgtttgtatgttttt- 9993146  T
Q  199 aaaggtttatatgtttatatgctct 223  Q
    |||||||||||||||||||||||||    
T  9993147 aaaggtttatatgtttatatgctct 9993171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6500020 - 6500235
Alignment:
Q  1 aaccttagttgcacacccaacacctttagcttgtttttacttgtgttctaaattatcagtagctttgcctctgtatctctatttgattaatataaatatt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||  | ||| | ||||| ||||||    
T  6500020 aaccttagttgcacacccaacacttttagcttgtttttacttgtgttctaaattatcagtagcttttcctttgtatcttaacttg-tcaatat-aatatt 6500117  T
Q  101 atcattgtttctgaaaatttaagttctacagttttaactctgatgatatttattgtttttaatgatatttgccctgatacattgtttgtatgtttttaaa 200  Q
    |||||||||||||||||  || ||||||||||||||||||||||||| ||||||||||||||||||  |||| |||||||||| ||| |||||| ||||     
T  6500118 atcattgtttctgaaaa-atatgttctacagttttaactctgatgatgtttattgtttttaatgatgattgctctgatacatt-tttttatgttgttaa- 6500214  T
Q  201 aggtttatatgtttatatgctct 223  Q
      | |||||||||||||||||||    
T  6500215 --ggttatatgtttatatgctct 6500235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 38195872 - 38195799
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttctacagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||   |||||||||| ||||||||||||| ||||||||    
T  38195872 tataaatattatcattgtttctgaaatattatgttctatttttttaactctaatgatatttattgattttaatg 38195799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 28323936 - 28324010
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttcta-cagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||    |||||||||| ||||||||||||| ||||||||    
T  28323936 tataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatg 28324010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 37876045 - 37875999
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgata 179  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||    
T  37876045 tttaactctgatgatatttattgtttttaatgctgtttgctctgata 37875999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 39373202 - 39373128
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttcta-cagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||    |||||||||| ||||||||||||| ||||||||    
T  39373202 tataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatg 39373128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 12248565 - 12248637
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttctacagttttaactctgatgatatttattgtttttaatg 164  Q
    |||||||||||||||||||| | |||   || |||||| | |||||| ||||||||||||||||||||||||||    
T  12248565 tataaatattatcattgttttt-aaatcatatgttctatacttttaattctgatgatatttattgtttttaatg 12248637  T

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Target: scaffold0105 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 46717 - 46790
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttctacagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||   |||||||||| ||||||||||||| ||||||||    
T  46717 tataaatattatcattgtttctgaaatattatgttctatttttttaactctaatgatatttattgattttaatg 46790  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 18762203 - 18762276
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttctacagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| | ||||   |||||||||| ||||||||||||||||||||||    
T  18762203 tataaatattatcattgtttctgaaatattatgctctattcttttaactctaatgatatttattgtttttaatg 18762276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 27657765 - 27657691
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttcta-cagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||    |||||||||| ||||||||||||||||||||||    
T  27657765 tataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgtttttaatg 27657691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 24641432 - 24641358
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttcta-cagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||    |||||||||| ||||||||||||| ||||||||    
T  24641432 tataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatg 24641358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 27222503 - 27222430
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttctacagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||   |||||||||| ||||||||||||| ||||||||    
T  27222503 tataaatattatcattgtttctgaaatattatgttctatttttttaactctaatgatatttattgattttaatg 27222430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 35254116 - 35254042
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttcta-cagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||    |||||||||| ||||||||||||| ||||||||    
T  35254116 tataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatg 35254042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 35264725 - 35264651
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttcta-cagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||    |||||||||| ||||||||||||| ||||||||    
T  35264725 tataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatg 35264651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 29245275 - 29245229
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgata 179  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||    
T  29245275 tttaactctgatgatatttactgtttttaatgctgtttgctctgata 29245229  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 31447662 - 31447824
Alignment:
Q  1 aaccttagttgcacacccaacacctttagcttgtttttacttgtgttctaaattatcagtagctttgcctctgtatctctatttgattaatataaatatt 100  Q
    ||||||||||||||||||||||   || ||||||||| | || |||||||| || | ||||||||||||| ||||||| ||  | ||  |||||||| ||    
T  31447662 aaccttagttgcacacccaacattctttgcttgttttaatttttgttctaagttgttagtagctttgcctttgtatct-taacttatctatataaatgtt 31447760  T
Q  101 atcattgtttctgaaaatttaagttctac-agttttaactctgatgatatttattgtttttaatg 164  Q
    |||||||| |||| ||  ||| ||| ||| || |||||||||||| |||||| ||||||||||||    
T  31447761 atcattgtctctg-aatcttatgttttacaagctttaactctgataatatttgttgtttttaatg 31447824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 5291559 - 5291511
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgataca 181  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||||    
T  5291559 tttaactctgatgatatttactgtttttaatgctgtttgctctgataca 5291511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 24589039 - 24588992
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgatac 180  Q
    |||||||||||||||||||| ||||||||||| | ||||| |||||||    
T  24589039 tttaactctgatgatatttactgtttttaatgctgtttgctctgatac 24588992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 30228431 - 30228384
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgatac 180  Q
    |||||||||||||||||||| ||||||||||| | ||||| |||||||    
T  30228431 tttaactctgatgatatttactgtttttaatgctgtttgctctgatac 30228384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 42052687 - 42052734
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgatac 180  Q
    |||||||||||||||||||| ||||||||||| | ||||| |||||||    
T  42052687 tttaactctgatgatatttactgtttttaatgctgtttgctctgatac 42052734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0906 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0906
Description:

Target: scaffold0906; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 3666 - 3739
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttctacagttttaactctgatgatatttattgtttttaatg 164  Q
    |||||||||||||||||||| | |||   || |||||| | |||||| ||||||||||||||||||||||||||    
T  3666 tataaatattatcattgtttattaaatcatatgttctatacttttaattctgatgatatttattgtttttaatg 3739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 3172685 - 3172610
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttcta--cagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||     |||||||||| ||||||||||||||||||||||    
T  3172685 tataaatattatcattgtttctgaaatattatgttctatttttttttaactctaatgatatttattgtttttaatg 3172610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 35400278 - 35400352
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttcta-cagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||    |||||||||| ||||||||||||| ||||||||    
T  35400278 tataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatg 35400352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 35647803 - 35647877
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttcta-cagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||    |||||||||| ||||||||||||| ||||||||    
T  35647803 tataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatg 35647877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 36246227 - 36246274
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgatac 180  Q
    |||||||||||||||||||| ||||||||||| | ||||| |||||||    
T  36246227 tttaactctgatgatatttactgtttttaatgctgtttgctctgatac 36246274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27373951 - 27373773
Alignment:
Q  1 aaccttagttgcacacccaacacctttagcttgtttttacttgtgttctaaattatcagtagctttgcctctgtatctctatttgattaatataaatatt 100  Q
    |||||||||||||||||||||||  || ||||||||| | || |||||||| || | ||||| ||||||| |||||||  | |       ||||||||||    
T  27373951 aaccttagttgcacacccaacactctttgcttgttttaatttttgttctaagttgttagtagttttgcctttgtatcttaact-------tataaatatt 27373859  T
Q  101 atcattgtttctgaaaatt-taagttctacagttttaactctgatgatatttattgtttttaatgatatttgccctgatacattgt 185  Q
    ||| |||||| |   |||| || ||| ||||| |||||||||||| ||||||  ||| ||||||||| | ||| ||||||||||||    
T  27373858 atctttgtttttctgaattatatgttttacagctttaactctgataatatttgctgtgtttaatgatgtctgctctgatacattgt 27373773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27464304 - 27464126
Alignment:
Q  1 aaccttagttgcacacccaacacctttagcttgtttttacttgtgttctaaattatcagtagctttgcctctgtatctctatttgattaatataaatatt 100  Q
    |||||||||||||||||||||||  || ||||||||| | || |||||||| || | ||||| ||||||| |||||||  | |       ||||||||||    
T  27464304 aaccttagttgcacacccaacactctttgcttgttttaatttttgttctaagttgttagtagttttgcctttgtatcttaact-------tataaatatt 27464212  T
Q  101 atcattgtttctgaaaatt-taagttctacagttttaactctgatgatatttattgtttttaatgatatttgccctgatacattgt 185  Q
    ||| |||||| |   |||| || ||| ||||| |||||||||||| ||||||  ||| ||||||||| | ||| ||||||||||||    
T  27464211 atctttgtttttctgaattatatgttttacagctttaactctgataatatttgctgtgtttaatgatgtctgctctgatacattgt 27464126  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 13687733 - 13687807
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttcta-cagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||    |||||||||| ||||||||||||| ||||||||    
T  13687733 tataaatattatcattgtttctgaaatattatgttctattttttttaactctaatgatatttattgattttaatg 13687807  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 29077769 - 29077722
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgatac 180  Q
    |||||||||||||||||||| ||||||||||| | ||||| |||||||    
T  29077769 tttaactctgatgatatttactgtttttaatgctgtttgctctgatac 29077722  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 19129820 - 19129774
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgata 179  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||    
T  19129820 tttaactctgatgatatttactgtttttaatgctgtttgctctgata 19129774  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 5686606 - 5686558
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgataca 181  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||||    
T  5686606 tttaactctgatgatatttactgtttttaatgctgtttgctctgataca 5686558  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 9434311 - 9434263
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgataca 181  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||||    
T  9434311 tttaactctgatgatatttactgtttttaatgttgtttgctctgataca 9434263  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 11006317 - 11006242
Alignment:
Q  91 tataaatattatcattgtttctgaaaatttaagttcta--cagttttaactctgatgatatttattgtttttaatg 164  Q
    ||||||||||||||||||||||||||  ||| ||||||     |||||||||| ||||||||||||| ||||||||    
T  11006317 tataaatattatcattgtttctgaaatattatgttctatttttttttaactctaatgatatttattgattttaatg 11006242  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 21002246 - 21002294
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgataca 181  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||||    
T  21002246 tttaactctgatgatatttactgtttttaatgttgtttgctctgataca 21002294  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 9086295 - 9086248
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgatac 180  Q
    |||||||||||||||||||| ||||||||||| | ||||| |||||||    
T  9086295 tttaactctgatgatatttactgtttttaatgctgtttgctctgatac 9086248  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 5711348 - 5711302
Alignment:
Q  133 tttaactctgatgatatttattgtttttaatgatatttgccctgata 179  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||    
T  5711348 tttaactctgatgatatttactgtttttaatgctgtttgctctgata 5711302  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 19993120 - 19993220
Alignment:
Q  1 aaccttagttgcacacccaacacctttagcttgtttttacttgtgttctaaattatcagtagctttgcctctgtatctctatttgattaatataaatatt 100  Q
    |||||||||||||||||||||||  || ||||| ||| | || |||||||| || | ||||||||||||| ||||||| ||| | ||  |||||||||||    
T  19993120 aaccttagttgcacacccaacactctttgcttg-tttaatttttgttctaagttgttagtagctttgcctttgtatct-tatcttatctatataaatatt 19993217  T
Q  101 atc 103  Q
    |||    
T  19993218 atc 19993220  T

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