View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_5 (Length: 494)
Name: NF12515_low_5
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 229 - 475
Target Start/End: Original strand, 32002803 - 32003049
Alignment:
| Q |
229 |
atcattgtgcttccatcatcaaagcaattattaatgggtaatttagagtaattagcactatacggttattgctcttgtaactatttaataacagtctagc |
328 |
Q |
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| T |
32002803 |
atcattgtgcttccatcatcaaagcaattattaatgggtaatttagagtaattagcactatacggttattgcccttgtaactatttaataacagtctagc |
32002902 |
T |
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| Q |
329 |
tttgtctattgtttaggggcttgtttgtcatgtattagcaaattttgtgattaaaaggtaaacttaatggtttccgtgacctatcctataatttatattc |
428 |
Q |
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| T |
32002903 |
tttgtctattgtttaggggcttgtttgtcacgtattagcaaattttgtgattaaaaggtaaacttaatggtttccgtgacctatcctataatttatattc |
32003002 |
T |
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| Q |
429 |
acatggtagatagtatatggtgtcacatctctttcatatgatggtca |
475 |
Q |
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| T |
32003003 |
acatggtagatagtatatggtgtcacatctctttcatatgatagtca |
32003049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 32002576 - 32002769
Alignment:
| Q |
1 |
aagagagaagacaatagaatagaagtggaagaaatatatttnnnnnnnnnnnnnnnnnnnntaatttagggtatcacatcaaagggctaatgaggggaca |
100 |
Q |
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| T |
32002576 |
aagagagaagacaatagaatagaagtggaagaaatatatttaaaactaaaaatgaaaaaaataatttagggtatcacatcaaagggctaatgaggggaca |
32002675 |
T |
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| Q |
101 |
atgtatgggaccaatgaaagtgctttagcctttctttttcttcattgcctacattattttcttgctttaatggtacaattagtattaatcatac |
194 |
Q |
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| T |
32002676 |
atgtatgggaccaatgaaagtgctttagcctttctttttcttcattgcctacattattttcttgctttaatggtacaattagtattaatcatac |
32002769 |
T |
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