View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12515_low_7 (Length: 439)
Name: NF12515_low_7
Description: NF12515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12515_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 40140174 - 40140375
Alignment:
| Q |
17 |
ttcactctgagcttatgataattttagctctcgttgttgcaagaaaagggatgttagactaaatgaggtaacttgttgtacacagtttgcaaatttatat |
116 |
Q |
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| T |
40140174 |
ttcactctgagcttatgataattttagctctcgttgttgcaagaaaagggatgttagactaaatgaggtaacttgttgtacacagtttgcaaatttattt |
40140273 |
T |
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| Q |
117 |
aaatggtgtgacggg---tattatatagtctacatgacgacggtccaggaagtgaacggcctgatacatgtagacattttctgttcaataaattactgta |
213 |
Q |
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| T |
40140274 |
aaatggtgtgacgggtattattatatagtctacatgacgacggtccaggaagtgaacggcctgatacatgtagacattttctgttcaataaattactgta |
40140373 |
T |
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| Q |
214 |
ta |
215 |
Q |
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|| |
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| T |
40140374 |
ta |
40140375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 251 - 419
Target Start/End: Original strand, 40140371 - 40140539
Alignment:
| Q |
251 |
gtatactatatatatacacacacgattggacacatatttagaacattgccaactctgctataatcaatattactgagcttcaaactttaggaattataat |
350 |
Q |
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| T |
40140371 |
gtatactatatatatacacacacgattggacacatatatagaacattgccaactctgctatgatcaatattactgagcttcaaactttaggaattataat |
40140470 |
T |
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| Q |
351 |
ttgtagaaatccatccctgaaaatgaagaaataaacaaaaacaaatcatcagtttccaatgtatatgta |
419 |
Q |
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| T |
40140471 |
ttgtagaaatccatccctgaaaatgaagaaagaaacaaaaacaaatcatcagtttccaatgtatatgta |
40140539 |
T |
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