View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12516_high_14 (Length: 206)
Name: NF12516_high_14
Description: NF12516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12516_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 37494765 - 37494942
Alignment:
| Q |
12 |
cagagatgatagtcttatgttagaatacttcacatcttggtagaatgtttctcacaaaacctttcaagtacaagaagaacaagatcctcacaactgctgc |
111 |
Q |
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| T |
37494765 |
cagagatgatagtcttatgttaaaatacttcacatcttgttagaatgtttctcacaatacctttcaagtacaagaagaacaagatcctcacaactgctgc |
37494864 |
T |
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| Q |
112 |
cctgttacaattttccaggcacaagtctgcaataagaggcctgagcctacctaacacatacatcatcctggtaagttta |
190 |
Q |
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| T |
37494865 |
cctgttacaattttccaggcacaagtctgcaataagaggcctgagcctacctaacac-tacatcatcctggtaagttta |
37494942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 37488115 - 37488188
Alignment:
| Q |
86 |
aagaacaagatcctcacaactgctgccctgttacaattttccaggcacaagtctgcaataagaggcctgagcct |
159 |
Q |
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| T |
37488115 |
aagaacaagatcctcccaaccgccgtcctgttacaactttccaggcacagttctggaaaaggaggcctgagcct |
37488188 |
T |
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