View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12516_high_2 (Length: 395)
Name: NF12516_high_2
Description: NF12516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12516_high_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 47081375 - 47081751
Alignment:
| Q |
18 |
aaacgtccactagaatggtctgattcggacacactagagattaaataatcatcagcagtagtcaaactctgacctcctaatatggtgtctgttgggtgat |
117 |
Q |
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| T |
47081375 |
aaacgtccactagaatggtctgattcggacacactagagattaaataatcatcagcagcagtcaaactctgacctcctaatatggtgtctgttgggtgat |
47081474 |
T |
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| Q |
118 |
caaagctttgccatataactgtagaattctcatcataaagcacaaagttgccagaatcatgcatagatgccttagagaccaaattctcctctgaatcatc |
217 |
Q |
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| T |
47081475 |
caaagctttgccatataactgtagaattctcatcataaagcacaaagttgccagaatcatgcatagatgccttagagaccaaattctcctctgaatcatc |
47081574 |
T |
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| Q |
218 |
tctcaagtctttattcatagctgaatctctcttcccatttggaagaagcagaccttgctctgtcaaattcaacatagatttagaggatatctgctggagc |
317 |
Q |
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|||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
47081575 |
tctcaagtctttattcatagctgaatctctgtttccattttgaagaagcagaccttgctctgtcaaattcaacatagatttagaggaga-ctgctggagc |
47081673 |
T |
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| Q |
318 |
atcacggttagcagtccacacaacagtggttgtgtttttagatggattaaccaaccatattccaacagcaaaaccatt |
395 |
Q |
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| T |
47081674 |
atcacggttagcagtccacacaacagtggttgtgttttcagatggattaaccaaccatattccaacagcaaaaccatt |
47081751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 30 - 395
Target Start/End: Complemental strand, 47060412 - 47060051
Alignment:
| Q |
30 |
gaatggtctgattcggacacactagagattaaataatcatcagcagtagtcaaactctgacctcctaatatggtgtctgttgggtgatcaaagctttgcc |
129 |
Q |
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||||||||||| | ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47060412 |
gaatggtctgacttggatatactagagattaaataatcatcagcagt---caaactctgacctcctaatatggtgtctgttgggtgatcaaagctttgcc |
47060316 |
T |
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| Q |
130 |
atataactgtagaattctcatcataaagcacaaagttgccagaatcatgcatagatgccttagagaccaaattctcctctgaatcatctctcaagtcttt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47060315 |
atataactgtagaattctcatcataaagcacaaagttgccagaatcatgcatagatgccttagagaccaaattctcctctgaatcatctctcaagtcttt |
47060216 |
T |
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| Q |
230 |
attcatagctgaatctctcttcccatttggaagaagcagaccttgctctgtcaaattcaacatagatttagaggatatctgctggagcatcacggttagc |
329 |
Q |
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|||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
47060215 |
attcatagctgaatctctgtttccattttgaagaagcagaccttgctctgtcaaattcaacatagatttagaggaga-ctgctggagcatcacggttagc |
47060117 |
T |
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| Q |
330 |
agtccacacaacagtggttgtgtttttagatggattaaccaaccatattccaacagcaaaaccatt |
395 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47060116 |
agtccacacaacagtggttgtgttttcagatggattaaccaaccatattccaacagcaaaaccatt |
47060051 |
T |
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