View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12516_high_3 (Length: 379)
Name: NF12516_high_3
Description: NF12516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12516_high_3 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 126 - 363
Target Start/End: Original strand, 29964004 - 29964241
Alignment:
| Q |
126 |
atgatatctgtgtcaaaaatgattaaagtttaatatcccttaatataagtatgattcctttttgagccatcacaaaaaatcacggttattgggaaatact |
225 |
Q |
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| T |
29964004 |
atgatatctgtgtcaaaaatgattaaagtttaatatcccttaatataagtatgattcttttttgagccatcacaaaaaatcacggttattgggaaatact |
29964103 |
T |
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| Q |
226 |
ccctagaaaaataacacagcttatcatatgtggactaaccgagtaattgtgatgcgatgattaaacttgttgtttatggtatctatttaatgcatagggt |
325 |
Q |
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| T |
29964104 |
ccctaaaaaaataacacagcttatcatatgtggactaaccgagtaattgtgatgcgatgattaaacttattatttatggtatctatttaatgcatagggt |
29964203 |
T |
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| Q |
326 |
gagcactgcctagtaaccaagtatgtcatcaccacctt |
363 |
Q |
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| T |
29964204 |
gagcactgcctagtaactaagtatgtcatcaccacctt |
29964241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 143 - 363
Target Start/End: Complemental strand, 29787081 - 29786861
Alignment:
| Q |
143 |
aatgattaaagtttaatatcccttaatataagtatgattcctttttgagccatcacaaaaaatcacggttattgggaaatactccctagaaaaataacac |
242 |
Q |
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| T |
29787081 |
aatgattaagctttaatatcccttaatgcaagtatgattcccttttgagacatcacaaaaaatcacgtttattgggaaatattccctagaaaaatatcat |
29786982 |
T |
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| Q |
243 |
agcttatcatatgtggactaaccgagtaattgtgatgcgatgattaaacttgttgtttatggtatctatttaatgcatagggtgagcactgcctagtaac |
342 |
Q |
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| T |
29786981 |
agcttattatatgtggactaattgagtaattgtgatggggtgattaaactttttgtttatggtatctattttatgcttagggtgagcactgtctagtaac |
29786882 |
T |
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| Q |
343 |
caagtatgtcatcaccacctt |
363 |
Q |
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| T |
29786881 |
caagtatgtcatcaccacctt |
29786861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 143 - 323
Target Start/End: Original strand, 29838201 - 29838380
Alignment:
| Q |
143 |
aatgattaaagtttaatatcccttaatataagtatgattcctttttgagccatcacaaaaaatcacggttattgggaaatactccctagaaaaataacac |
242 |
Q |
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|||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| || ||| | ||| |
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| T |
29838201 |
aatgattaaactttaatatccct-aatgtaagtatgattcccttttgagccatcacaaaaaatcacgcttattgggaaaaactccatataaatagttcac |
29838299 |
T |
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| Q |
243 |
agcttatcatatgtggactaaccgagtaattgtgatgcgatgattaaacttgttgtttatggtatctatttaatgcatagg |
323 |
Q |
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| T |
29838300 |
agcttattatatgtggactaattgagtaattgtgattggataataaaatttgttgtttatggtatctatttaatgcttagg |
29838380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 29963893 - 29963948
Alignment:
| Q |
16 |
atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttg |
71 |
Q |
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| T |
29963893 |
atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttg |
29963948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 2038191 - 2038136
Alignment:
| Q |
16 |
atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttg |
71 |
Q |
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| T |
2038191 |
atgaatagtgatagtgatgataggattcttacttgtctccctagagtgaatgtttg |
2038136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 34518625 - 34518680
Alignment:
| Q |
16 |
atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttg |
71 |
Q |
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| T |
34518625 |
atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatatttg |
34518680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 44667912 - 44667857
Alignment:
| Q |
16 |
atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttg |
71 |
Q |
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| T |
44667912 |
atgaagagtaataatgataataggattcttacttgtctccctagagtgaatgtttg |
44667857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 188907 - 188962
Alignment:
| Q |
16 |
atgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttg |
71 |
Q |
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| T |
188907 |
atgaagatttataatgatgataggattcttacttgtctccctaaagtgaatgtttg |
188962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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