View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12516_high_4 (Length: 347)

Name: NF12516_high_4
Description: NF12516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12516_high_4
NF12516_high_4
[»] chr5 (8 HSPs)
chr5 (32-330)||(41547398-41547696)
chr5 (166-249)||(41519282-41519365)
chr5 (154-249)||(41509050-41509145)
chr5 (165-238)||(41503562-41503635)
chr5 (165-249)||(41499369-41499453)
chr5 (274-302)||(33080012-33080040)
chr5 (194-238)||(41469535-41469579)
chr5 (157-249)||(41503905-41503997)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 32 - 330
Target Start/End: Original strand, 41547398 - 41547696
Alignment:
Q  32 cagagacatttaagctcatcaatagtttggaatcatcctccagccttgaaactttttcatgcaagactctaaacttcgtgatccaagacgctagtaatat 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547398 cagagacatttaagctcatcaatagtttggaatcatcctccagccttgaaactttttcatgcaagactctaaacttcgtgatccaagacgctagtaatat 41547497  T
Q  132 gtcaacattgtgcttatcatttgctaatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccattt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547498 gtcaacattgtgcttatcatttgctaatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccattt 41547597  T
Q  232 ttaatctcaattccagcccacacaatacaatcttcctcccatttttccttcaactttgtcaactccaaaaccttattctccatctcaccagtcactttt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41547598 ttaatctcaattccagcccacacaatacaatcttcctcccatttttccttcaactttgtcaactccaaaaccttattctccatctcaccagtcactttt 41547696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 41519282 - 41519365
Alignment:
Q  166 ttttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc 249  Q
    |||||||||||||  || |||||| ||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||||    
T  41519282 ttttcgttcctcagctcgcttataattgccaaattcgtgttaactgtttccttcaattcgccatttttaatctcaattccagcc 41519365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 41509050 - 41509145
Alignment:
Q  154 gctaatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc 249  Q
    |||||||| || |||||||||||||  || |||||| ||||||||||| | || |||||||| |||||||||| |||||| || ||||||||||||    
T  41509050 gctaattttctgttttcgttcctcagctcgcttataattgccaaattcgtattcactgtttccttcaattcactattttttatttcaattccagcc 41509145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 41503562 - 41503635
Alignment:
Q  165 attttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatct 238  Q
    |||||| |||||||  || ||||||||| |||||||||| || | |||||| |||||||||||| |||||||||    
T  41503562 attttctttcctcagctcacttatagtttccaaattcttcttcattgtttccttcaattcaccagttttaatct 41503635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 41499369 - 41499453
Alignment:
Q  165 attttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc 249  Q
    |||||| |||||||  || ||||||||| |||||||||| || | |||||| |||||||||||| ||| ||||| || |||||||    
T  41499369 attttctttcctcagctcacttatagtttccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagcc 41499453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 33080012 - 33080040
Alignment:
Q  274 ttttccttcaactttgtcaactccaaaac 302  Q
    |||||||||||||||||||||||||||||    
T  33080012 ttttccttcaactttgtcaactccaaaac 33080040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 41469535 - 41469579
Alignment:
Q  194 ccaaattcttgtttactgtttcattcaattcaccatttttaatct 238  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||    
T  41469535 ccaaattcttctttgctgtttccttcaattcatcatttttaatct 41469579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 41503905 - 41503997
Alignment:
Q  157 aatttgctattttcgttcctcaattctcttatagttgccaaattcttgtttactgtttcattcaattcaccatttttaatctcaattccagcc 249  Q
    |||||||| ||||| |||||||| || |||||||||||||||| |||  | || ||| | |||||||| | ||||||| ||| |||| |||||    
T  41503905 aatttgctgttttctttcctcaactcgcttatagttgccaaatacttcgtcacagttgccttcaattcgctatttttactcttaatttcagcc 41503997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University