View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12516_low_1 (Length: 457)
Name: NF12516_low_1
Description: NF12516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12516_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Original strand, 30483028 - 30483446
Alignment:
| Q |
19 |
catgccaccagcatcatgtcgaaaacttatcctatcagtgcataattgccatgcaccacttgcctgtgcgaaatcataaattaattagtcctcaatatat |
118 |
Q |
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| T |
30483028 |
catgccaccagcatcatgtcgaaaacttatcctatcagtgcataattgccatgcaccacttgcctg------atcataaattaattagtcctcaatatat |
30483121 |
T |
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| Q |
119 |
taattttttcccttagtgtaattaaattttttccctgcataccttatcaacatgaatggctttcctgactgcatcgttgtttagccacgtggttgctact |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30483122 |
taattttttcccttagtgtaattaaattttttccctgcataccttatcaacatgaatggctttcctgactgcatcgttgtttagccatgtggttgctact |
30483221 |
T |
|
| Q |
219 |
tcatcattctgcgttttgcgaaatttgttattggtttccttaatcagtgccaggttaacacgacccaaattaaatttatatcataaaaacttacaacaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30483222 |
tcatcattctgcgttttgcgaaatttgttattggtttccttaatcagtgccaggttaacacgacccaaattaaattcatatcataaaaacttacaacaca |
30483321 |
T |
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| Q |
319 |
agggacatgtctcctttgggcagccattaattgaggccataaggtaacaaggccatctctgactggtgccctaaaaggccaagctctaccaaacatcctc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30483322 |
agggacatgtctcctttgggcagccattaattgaggccataaggtaacaaggccatctctgactggtgccctaaaaggccaagctctaccaaacatcctc |
30483421 |
T |
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| Q |
419 |
tttctcacttggagaggtctctctg |
443 |
Q |
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||||||||||||||||||||||||| |
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| T |
30483422 |
tttctcacttggagaggtctctctg |
30483446 |
T |
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