View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12516_low_10 (Length: 258)
Name: NF12516_low_10
Description: NF12516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12516_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 2403995 - 2404218
Alignment:
| Q |
16 |
aagaaggaacaagaagaaagtgaaattttcagaaaatgtgatggtgaaggaatttagagaaaaaccggggaagaaaaacagagtatcaattaatgaatgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2403995 |
aagaaggaacaagaagaaagtgaaattttcagaaaatgtgatggtaaaggaatttagagaaaaaccggggaagaaaaacagagtatcaattaatgaatgc |
2404094 |
T |
|
| Q |
116 |
agaaatgaaattccagaaacaaaagcaatgccagcaaatagagttgctttgtacaatggaattttaagagatagagttcaaagaatggggtgttgtcatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2404095 |
agaaatgaaattccagaaacaaaagcaatgccagcaaatagagttgctttgtacaatggaattttaagagatagagttcaaagaatggggtgttgtcatt |
2404194 |
T |
|
| Q |
216 |
gatcatcttggttatggaacttag |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2404195 |
gatcatcttggttatggaacttag |
2404218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University