View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12516_low_13 (Length: 242)
Name: NF12516_low_13
Description: NF12516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12516_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 10978892 - 10979085
Alignment:
| Q |
30 |
agataaaaactgctacttatattaatgcttggtaccaacaatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcact |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10978892 |
agataaaaactgctacttatattaatgcttggtaccaacaatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcact |
10978991 |
T |
|
| Q |
130 |
aactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttatta |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10978992 |
aactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctactggtggatcttgtaaacaaaagtaaggcttatta |
10979085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 10932539 - 10932730
Alignment:
| Q |
32 |
ataaaaactgctacttatattaatgcttggtaccaacaatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaa |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
10932539 |
ataaaaactgctacttatattaatgcttggtaccaacaatattaaatgtacttcaaccaagaaccaaaaagagattaggttggtcccttgggatcactaa |
10932638 |
T |
|
| Q |
132 |
ctgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttatta |
223 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||| || || ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10932639 |
ctgatgtaccataggaagtccatgagttgctactactattatctccaacatcctctactggtggatcttgtggacaaaagtaaggcttatta |
10932730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 43 - 223
Target Start/End: Original strand, 10903008 - 10903190
Alignment:
| Q |
43 |
tacttatattaatgcttgg--taccaacaatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtac |
140 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
10903008 |
tacttatattaatgcttggggtacgaacaatatgatatgtaattcagccaagaaccaaaaagagattaggttggtcccttgggatcactaattgatgtac |
10903107 |
T |
|
| Q |
141 |
catacgaactccatgagtttctattataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttatta |
223 |
Q |
| |
|
|||| ||| |||||||||| ||||||| |||||||||||| || || ||||||||||||| |||||||||||||||||||| |
|
|
| T |
10903108 |
cataggaagtccatgagttgctattattatcatctccaacgtctgctgttggtggatcttgtggacaaaagtaaggcttatta |
10903190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 46 - 223
Target Start/End: Original strand, 10914171 - 10914350
Alignment:
| Q |
46 |
ttatattaatgcttggtaccaacaatatg--atatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccat |
143 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
10914171 |
ttatattaatgcttggtaccaataatatctaaaatgtaattcaaccaagaaccagaaagagatcaggttggtcccttgggataactaactgatgtaccat |
10914270 |
T |
|
| Q |
144 |
acgaactccatgagtttctattataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttatta |
223 |
Q |
| |
|
| ||| ||||||| || ||| || ||||||||||||||| || ||||||||||||| ||||||| |||||||||||| |
|
|
| T |
10914271 |
aagaagtccatgaattgctacaattatcatctccaacatctgctgttggtggatcttgtggacaaaaataaggcttatta |
10914350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 11029145 - 11028958
Alignment:
| Q |
30 |
agataaaaactgc-tacttatattaatgcttggtaccaacaatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcac |
128 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| || | || || |||||| ||||| ||| | |
|
|
| T |
11029145 |
agataaaaactgcatacttatattaatgcttggtaccaacaatatgatatgtaatacaaccacaaagctaactga-------ttggtcacttgggatcgc |
11029053 |
T |
|
| Q |
129 |
taactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttatta |
223 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| ||| ||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
11029052 |
taactgatgtaccataggaagtccatgagttgctactattatcgactccaacatcctctactagtggatcttgcggacaaaagtaaggcttatta |
11028958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 11010490 - 11010651
Alignment:
| Q |
52 |
taatgcttggtaccaacaatatgatatgtaattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactc |
151 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
11010490 |
taatgcttggtgacaacaatatgatatgtaattcaaacgagaaccaaaa-gagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtc |
11010588 |
T |
|
| Q |
152 |
catgagtttctattataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttatta |
223 |
Q |
| |
|
|||||||| ||| | || ||||||| ||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
11010589 |
catgagttgctactgta---------aacatccgctattggtgaatcttgtggacaaaagtaaggcttatta |
11010651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University