View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12516_low_5 (Length: 340)
Name: NF12516_low_5
Description: NF12516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12516_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 3427466 - 3427158
Alignment:
| Q |
18 |
cacatttagtcaatgatgaatatctacaaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
3427466 |
cacatttagtcaatgatgaatatctacaaaagtacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtagtttcatacaacaagc |
3427367 |
T |
|
| Q |
118 |
aaatattcattgtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcat |
217 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3427366 |
aaacatccattgtgcttattgtgatggtgcatattcccaagttggtttccctaatcttgatcttcaagttcataattcttggctcttttttccttttcat |
3427267 |
T |
|
| Q |
218 |
agatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3427266 |
agatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctccaaatggcatgc |
3427167 |
T |
|
| Q |
318 |
aatttccct |
326 |
Q |
| |
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||||||||| |
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| T |
3427166 |
aatttccct |
3427158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 3433657 - 3433349
Alignment:
| Q |
18 |
cacatttagtcaatgatgaatatctacaaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagc |
117 |
Q |
| |
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||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
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| T |
3433657 |
cacatttggtcaacgatgaatatctacaaaaatacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtaatttcatacaacaagc |
3433558 |
T |
|
| Q |
118 |
aaatattcattgtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcat |
217 |
Q |
| |
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||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433557 |
aaacatccattgtgcttattgtgatggtgcatattcccaagttggttttcctaatcttgatcttcaagttcatagttcttggctcttttttccttttcat |
3433458 |
T |
|
| Q |
218 |
agatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3433457 |
agatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgc |
3433358 |
T |
|
| Q |
318 |
aatttccct |
326 |
Q |
| |
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||||||||| |
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| T |
3433357 |
aatttccct |
3433349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 11896810 - 11897118
Alignment:
| Q |
18 |
cacatttagtcaatgatgaatatctacaaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagc |
117 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| |||||||| |
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| T |
11896810 |
cacatttggtcaacgatgaatatcttcaaaaatacaaaaaagccattgaactcatgaaagccttaccatccaatgatccacgtagtttcatgcaacaagc |
11896909 |
T |
|
| Q |
118 |
aaatattcattgtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcat |
217 |
Q |
| |
|
||| | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
11896910 |
aaacgtccactgtgcttattgtgatggtgcatattcccaagttggcttccctaaccttgatcttcaagttcatggctcttggctcttttttccttttcat |
11897009 |
T |
|
| Q |
218 |
agatggtatctttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgc |
317 |
Q |
| |
|
|| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11897010 |
aggtggtacctttatttctatgaaaggatcttaggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgc |
11897109 |
T |
|
| Q |
318 |
aatttccct |
326 |
Q |
| |
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|||||||| |
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|
| T |
11897110 |
gatttccct |
11897118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 29 - 326
Target Start/End: Original strand, 11912154 - 11912451
Alignment:
| Q |
29 |
aatgatgaatatctacaaaagtacaaaaaagccattgcactcatgaaagccttaccttccagtgatccacgtagtttcatacaacaagcaaatattcatt |
128 |
Q |
| |
|
||||| |||||||| ||||| ||||| |||||||||| |||| |||||| ||||| |||| |||||||||||||||||||||||||||||| || |||| |
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| T |
11912154 |
aatgacgaatatcttcaaaaatacaagaaagccattgagctcacgaaagcattaccatccaatgatccacgtagtttcatacaacaagcaaacatccatt |
11912253 |
T |
|
| Q |
129 |
gtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcatagttcttggctcttttttccttttcatagatggtatct |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
11912254 |
gtgcttattgtgatggtgcatattcccaagttggtttccctaaccttgatcttcaagttcataactcttggctcttttttccttttcatagatggtacct |
11912353 |
T |
|
| Q |
229 |
ttatttctatgaaagaatcttgggtagcttgatcaatgatccaacctttgctttaccattttggaactatgacgctcctaatggcatgcaatttccct |
326 |
Q |
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||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11912354 |
ttatttccatgagagaatcttgggtagtttgatcaatgatccagcctttgctttaccattttggaactttgacgctcctaatggcatgcaatttccct |
11912451 |
T |
|
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