View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12516_low_6 (Length: 308)
Name: NF12516_low_6
Description: NF12516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12516_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 14555898 - 14556176
Alignment:
| Q |
15 |
tgaacataaaaatagtaaatcaattnnnnnnncaacaattataataaagtctgctcaatagtaaaacctggagaatttgtttctgtgttagactctcatt |
114 |
Q |
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| T |
14555898 |
tgaacataaaaatagtaaatcaattaaaaaaacaacaattataataaagtctgctcaatagtagaacctggagaatttgtttctgtgttacactctcatt |
14555997 |
T |
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| Q |
115 |
tataaagaatgtaccacatcatataatatcctctcattttaannnnnnnnacaaatcaaataatattgttattataattggtttctatgccaaaattatt |
214 |
Q |
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| T |
14555998 |
tataaagaatgtaccacatcatgtaatatcctctcatttt-tttttttttacaaatcaaataatatcgttattataattggtttctatgccaaaattatt |
14556096 |
T |
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| Q |
215 |
tataaatagtatgattcaagataaatattctattcacacatccttaacaagaaagaggaggttgggaaatagaaaataat |
294 |
Q |
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| T |
14556097 |
ttctaatagtatgattcaagataaatcttctattcacacatccttaacaagaaagagggggttgggaaatagaaaataat |
14556176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 14573944 - 14574016
Alignment:
| Q |
190 |
aattggtttctatgccaaaattatttataaatagtatgattcaagataaatattctattcacacatccttaac |
262 |
Q |
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| T |
14573944 |
aattgatttctatatcaaaattatttataaatagtattattcatgataaatctcttattcacgtatccttaac |
14574016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 978911 - 978839
Alignment:
| Q |
190 |
aattggtttctatgccaaaattatttataaatagtatgattcaagataaatattctattcacacatccttaac |
262 |
Q |
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| T |
978911 |
aattggtttctataccaaaattatttataaatagtattattcgtgataattctcctattcacatattcttaac |
978839 |
T |
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