View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12516_low_8 (Length: 278)
Name: NF12516_low_8
Description: NF12516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12516_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 29612201 - 29611941
Alignment:
| Q |
9 |
aggagcagagaccaaaaacctcaatttgtactcaccgttgattgtaatcccaagt--------attgactt-cttgaaaaagcagggaacgaatgtgtgt |
99 |
Q |
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| T |
29612201 |
aggaacagaaaccaaaaacctcaatttgtactcaccgttgattgtggtcccaagtgattcagtaatgattgacttgaaaaagcagggaacgaatctgtgt |
29612102 |
T |
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| Q |
100 |
aggggtgcagttgtcctgaaaacatgcacatcaaataaaaactttgtgttagatatttgttagaatttgtgtaggtagttagaagttaattatgattaga |
199 |
Q |
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| T |
29612101 |
agtagtgcagttgtcctgaaaacatgcacatcaaataaaaact--gtgttagatatttgttagaatttgtttaggtagttagaagttaattatgattaga |
29612004 |
T |
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| Q |
200 |
tggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgt |
262 |
Q |
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| T |
29612003 |
tggaagtttattatgttagttaacttgggatcacaatataaaggtgtatcctaccgtaattgt |
29611941 |
T |
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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 38467139 - 38467216
Alignment:
| Q |
184 |
gttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattg |
261 |
Q |
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| T |
38467139 |
gttagttatgattaggtggaaatttgttatgttagttaacttgggatcactatataaagatgtatcctaccctaattg |
38467216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 17236659 - 17236592
Alignment:
| Q |
175 |
tagttagaagttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaag |
242 |
Q |
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| T |
17236659 |
tagttagaagttagttatgattaggtggaagttaattatgttagttaccttgggatcactgtataaag |
17236592 |
T |
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