View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12516_low_9 (Length: 277)
Name: NF12516_low_9
Description: NF12516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12516_low_9 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 18343845 - 18344099
Alignment:
| Q |
16 |
gttttgatataaggttctaacgaatccatatttctcnnnnnnnnn---attatcatattggcaaaaatttctaaattcaaaa-aatccacattttcgcgg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18343845 |
gttttgatataaggttctaacgaatccatatttgtcttttttttttttattatcatattggcaaaaatttctaaattcaaaaaaatccacattttcgcgg |
18343944 |
T |
|
| Q |
112 |
gcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343945 |
gcgaatatttactctttcattataaatttaagatgtaatgttgggttagtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccat |
18344044 |
T |
|
| Q |
212 |
ctaacgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc |
266 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18344045 |
ctaatgaatcagtaagattatgaaatttaatataatcttaggtattcacaggttc |
18344099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 61 - 227
Target Start/End: Complemental strand, 36639037 - 36638870
Alignment:
| Q |
61 |
attatcatattggcaaaaatttctaaatt-caaaaaatccacattttcgcgggcgaatatttactctttcattataaatttaagatgtaatgttgggtta |
159 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36639037 |
attatcatattggcaaaaaaaattaaattaaaaaaaatccacattttcgcgggcgaatattcactctttcattataaatttaagatgtaatgttgggtta |
36638938 |
T |
|
| Q |
160 |
gtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaatcagtaag |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
36638937 |
gtccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaatgaattagtaag |
36638870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 36639088 - 36639056
Alignment:
| Q |
16 |
gttttgatataaggttctaacgaatccatattt |
48 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
36639088 |
gttttgatataatgttctaacgaatccatattt |
36639056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 67 - 266
Target Start/End: Complemental strand, 163439 - 163237
Alignment:
| Q |
67 |
atattggcaaaaatttctaaattcaaaaaa--tccacattttcgcgggcgaatattt-actctttcattataaatttaagatgtaatgttgggttagtcc |
163 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
163439 |
atattggcaaaaatttctaaattaaaaaaaaatccacattttcgcgggcgaatattttactctttcattataaatttaagatgtgatgttggattagtcc |
163340 |
T |
|
| Q |
164 |
acaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatcttaggtattcacagg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
163339 |
acaactcctcaaaaaataatgaattcttagttccgtccaccatcccatctaatgaatcagtaagattatgaaatttaatataatcttaagtattcacaag |
163240 |
T |
|
| Q |
264 |
ttc |
266 |
Q |
| |
|
||| |
|
|
| T |
163239 |
ttc |
163237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 163498 - 163466
Alignment:
| Q |
16 |
gttttgatataaggttctaacgaatccatattt |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
163498 |
gttttgatataaggttctaacgaatccatattt |
163466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 64 - 257
Target Start/End: Complemental strand, 9857838 - 9857643
Alignment:
| Q |
64 |
atcatattggcaaaaatttctaaattcaaaaaa-tccacattttcgcgggcgaatattt-actctttcattataaatttaagatgtaatgttgggttagt |
161 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||| | | |||||||| ||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
9857838 |
atcatattggcaaaaatttataaattcaaaaaaatccacattttcacatgtgaatattttactctttcattataaatttaagatgtaatgtcagattagc |
9857739 |
T |
|
| Q |
162 |
ccacaactcctcaaaaaataatgaattcttagttccgtccgccatcccatctaacgaatcagtaagattatgaaatttaatataatcttaggtatt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||| ||||||||| |||||||||||||| | ||||||| |
|
|
| T |
9857738 |
ccacaactcctcaaaaaataatgaattcttagttttgtccaccatccaatctaatgaatcaataagattattaaatttaatataatttgaggtatt |
9857643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 31878264 - 31878210
Alignment:
| Q |
91 |
aaaaaatccacattttcgcgggcgaatatttactctttcattataaatttaagat |
145 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
31878264 |
aaaaaatccacatttttgcgaccgaataattactctttaattataaatttaagat |
31878210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University