View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12517_high_1 (Length: 427)
Name: NF12517_high_1
Description: NF12517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12517_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 2131679 - 2131281
Alignment:
| Q |
18 |
atgttatcattcacttcaacttttccgttttgattatttcatgtgcatcagtgctcttcgtcatcccgtttgtaccctgttagaaattttgcttgtacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131679 |
atgttatcattcacttcaacttttccgttttgattatttcatgtgcatcagtgctcttcgtcatcccgtttgtaccctgttagaaattttgcttgtacaa |
2131580 |
T |
|
| Q |
118 |
actgtctgtcctcattggatggttctgttgggtgcatgcatttatttaccatttttaaggtatatttttgatttcttcactatggatcttactggatagt |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2131579 |
actgtctgtcctcattggatggttctgttggttgcatgcatttatttaccatttttaaggtatattttttatttcttcactatggatcttactggatagt |
2131480 |
T |
|
| Q |
218 |
tcttaccttattctcaggttcgggattacattcatgttgttgatttagctgatggccatattgctgcattgcgtaaactagaagaagctgacataggtat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131479 |
tcttaccttattctcaggttcgggattacattcatgttgttgatttagctgatggccatattgctgcattgcgtaaactagaagaagctgacataggtat |
2131380 |
T |
|
| Q |
318 |
tattccaaatatatcattatcttaccttctaaaacttactcgtgttattggaaaattttgaggcagtggtatcttatgtctttaatattcatgctctgt |
416 |
Q |
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| T |
2131379 |
tattccaaatatatcattatcttaccttctaaaacttactcatgttattggaaaattttgaggcagtggtatcttatgtctttaatattcatgctctgt |
2131281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 100 - 388
Target Start/End: Complemental strand, 2127035 - 2126740
Alignment:
| Q |
100 |
gaaattttgcttgtacaaactgtctgtcctcattggatggttctgtt-gggtgcatgcatttatttaccatttttaaggtatatttttgatttcttcact |
198 |
Q |
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| T |
2127035 |
gaaattttgcttgaacatactacctgtccttatcggattgttctgttagggtgcctgtatttattttccattctaaagatctacctttgatttctttacc |
2126936 |
T |
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| Q |
199 |
atggatcttactggatagttcttaccttattctcaggttcgggattacattcatgttgttgatttagctgatggccatattgctgcattgcgtaaactag |
298 |
Q |
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|| ||||||| ||||| |||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||| || ||||||||||||| |||||||| |
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| T |
2126935 |
attgatcttattggatgattctcaccttattcttaggttcgggatttcattcatgttgttgatttagcagatgggcacattgctgcattgcttaaactag |
2126836 |
T |
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| Q |
299 |
aagaagctgacataggtattattccaaatatatcattatcttaccttctaaaactta------ctcgtgttattggaaaattttgaggcagtggta |
388 |
Q |
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| T |
2126835 |
aggaagctgatataggtattattccaaatttatcattatcttatcttctaatacttaacctgtgtcgtgttattggaaaattctgaggcagtggta |
2126740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 41807785 - 41807714
Alignment:
| Q |
228 |
ttctcaggttcgggattacattcatgttgttgatttagctgatggccatattgctgcattgcgtaaactaga |
299 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||| |
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| T |
41807785 |
ttctcaggtccgtgattacattcatgttgttgatttagctgatgggcacattgctgcattgtgtaagctaga |
41807714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 42030860 - 42030931
Alignment:
| Q |
228 |
ttctcaggttcgggattacattcatgttgttgatttagctgatggccatattgctgcattgcgtaaactaga |
299 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||| |
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| T |
42030860 |
ttctcaggtccgtgattacattcatgttgttgatttagctgatgggcacattgctgcattgtgtaagctaga |
42030931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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