View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12517_high_3 (Length: 315)

Name: NF12517_high_3
Description: NF12517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12517_high_3
NF12517_high_3
[»] chr6 (12 HSPs)
chr6 (32-298)||(3921706-3921985)
chr6 (30-92)||(4868689-4868749)
chr6 (30-92)||(13353348-13353408)
chr6 (30-92)||(33796473-33796533)
chr6 (28-92)||(17147772-17147834)
chr6 (30-92)||(6400732-6400792)
chr6 (30-154)||(12329995-12330116)
chr6 (30-82)||(33631692-33631742)
chr6 (26-82)||(1788829-1788883)
chr6 (28-92)||(6542820-6542882)
chr6 (30-92)||(9705168-9705226)
chr6 (29-93)||(20830659-20830721)
[»] chr5 (17 HSPs)
chr5 (30-92)||(24269982-24270042)
chr5 (30-92)||(24346613-24346673)
chr5 (30-92)||(95378-95438)
chr5 (30-92)||(8081226-8081286)
chr5 (30-92)||(24531746-24531806)
chr5 (30-92)||(41666869-41666929)
chr5 (30-82)||(43117794-43117844)
chr5 (37-92)||(6919306-6919359)
chr5 (30-92)||(33337350-33337410)
chr5 (30-92)||(38731715-38731774)
chr5 (37-92)||(15590092-15590145)
chr5 (30-92)||(18333577-18333636)
chr5 (30-92)||(30770161-30770221)
chr5 (28-92)||(32908830-32908891)
chr5 (49-93)||(6415836-6415880)
chr5 (52-92)||(18885394-18885434)
chr5 (37-92)||(20510754-20510807)
[»] chr3 (9 HSPs)
chr3 (26-104)||(13574785-13574861)
chr3 (28-92)||(34992751-34992813)
chr3 (30-92)||(16239739-16239799)
chr3 (30-92)||(31317378-31317438)
chr3 (30-92)||(35038306-35038366)
chr3 (30-92)||(39683380-39683440)
chr3 (50-92)||(4155489-4155531)
chr3 (30-82)||(19954339-19954389)
chr3 (49-82)||(21808834-21808867)
[»] chr2 (12 HSPs)
chr2 (30-92)||(16419414-16419474)
chr2 (29-93)||(41069253-41069315)
chr2 (30-92)||(2029916-2029976)
chr2 (30-92)||(5711551-5711611)
chr2 (30-92)||(14466287-14466347)
chr2 (49-92)||(19110407-19110450)
chr2 (49-87)||(40149118-40149156)
chr2 (30-94)||(17525209-17525271)
chr2 (30-92)||(16533459-16533519)
chr2 (49-92)||(37812380-37812423)
chr2 (28-81)||(33381076-33381127)
chr2 (50-90)||(18607123-18607163)
[»] chr1 (19 HSPs)
chr1 (30-92)||(4112883-4112943)
chr1 (28-92)||(369777-369839)
chr1 (37-93)||(12325408-12325462)
chr1 (37-93)||(12376549-12376603)
chr1 (49-92)||(25145597-25145640)
chr1 (50-92)||(34264598-34264640)
chr1 (30-82)||(2859514-2859564)
chr1 (30-94)||(17412479-17412541)
chr1 (118-162)||(26173499-26173543)
chr1 (48-92)||(52961510-52961554)
chr1 (30-92)||(8870801-8870861)
chr1 (30-92)||(25713305-25713365)
chr1 (30-88)||(39348233-39348289)
chr1 (50-92)||(51459817-51459859)
chr1 (49-82)||(9146676-9146709)
chr1 (30-94)||(27413494-27413556)
chr1 (28-92)||(38668270-38668332)
chr1 (48-92)||(7653404-7653448)
chr1 (64-92)||(16163111-16163139)
[»] scaffold0519 (1 HSPs)
scaffold0519 (28-92)||(2061-2123)
[»] chr8 (21 HSPs)
chr8 (28-92)||(11232306-11232368)
chr8 (29-92)||(8084273-8084334)
chr8 (30-92)||(3157121-3157181)
chr8 (30-92)||(7669566-7669625)
chr8 (28-93)||(37868184-37868247)
chr8 (30-82)||(35682903-35682953)
chr8 (30-93)||(37867944-37868005)
chr8 (30-92)||(3157436-3157496)
chr8 (30-92)||(20094672-20094732)
chr8 (30-92)||(20301408-20301468)
chr8 (30-92)||(21088040-21088100)
chr8 (30-92)||(39052649-39052709)
chr8 (30-92)||(39052806-39052866)
chr8 (49-93)||(10615558-10615602)
chr8 (33-104)||(31079663-31079732)
chr8 (31-82)||(39960105-39960154)
chr8 (49-104)||(10615040-10615095)
chr8 (30-92)||(41790805-41790865)
chr8 (30-87)||(18004211-18004266)
chr8 (30-87)||(31197761-31197816)
chr8 (30-82)||(37868470-37868520)
[»] chr4 (16 HSPs)
chr4 (28-92)||(6218349-6218411)
chr4 (30-95)||(52559716-52559779)
chr4 (30-92)||(5398587-5398647)
chr4 (30-92)||(28245638-28245698)
chr4 (49-92)||(35796854-35796897)
chr4 (30-92)||(40717318-40717378)
chr4 (30-92)||(50543442-50543502)
chr4 (52-93)||(30530038-30530079)
chr4 (30-82)||(35788807-35788857)
chr4 (49-92)||(27634193-27634236)
chr4 (28-82)||(35819015-35819067)
chr4 (28-81)||(1215984-1216035)
chr4 (28-93)||(43743129-43743192)
chr4 (56-104)||(12005570-12005619)
chr4 (63-92)||(36686021-36686050)
chr4 (118-154)||(400616-400652)
[»] chr7 (19 HSPs)
chr7 (30-92)||(1596740-1596800)
chr7 (30-92)||(36277103-36277163)
chr7 (49-92)||(48243171-48243214)
chr7 (30-92)||(3519837-3519897)
chr7 (38-92)||(14540853-14540905)
chr7 (30-92)||(21861441-21861501)
chr7 (30-92)||(25620283-25620343)
chr7 (30-92)||(29469752-29469812)
chr7 (30-92)||(40746145-40746204)
chr7 (30-82)||(3519926-3519976)
chr7 (30-92)||(2315138-2315198)
chr7 (50-89)||(5871691-5871730)
chr7 (30-92)||(31892299-31892359)
chr7 (30-92)||(33996191-33996251)
chr7 (30-92)||(40898827-40898887)
chr7 (118-156)||(3038133-3038171)
chr7 (30-82)||(4886476-4886526)
chr7 (118-154)||(23839128-23839164)
chr7 (30-92)||(48661431-48661492)
[»] scaffold0692 (1 HSPs)
scaffold0692 (30-90)||(5633-5691)
[»] scaffold0048 (1 HSPs)
scaffold0048 (52-92)||(82008-82048)
[»] scaffold0047 (1 HSPs)
scaffold0047 (49-92)||(12811-12853)
[»] scaffold0041 (1 HSPs)
scaffold0041 (30-92)||(67397-67457)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 32 - 298
Target Start/End: Original strand, 3921706 - 3921985
Alignment:
Q  32 cccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaaaagccccacattagcaaaaatacagtctaacaatgtgt 131  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  3921706 cccatcatttatgtccacacaaaacaagctcaatagtgctggtcgtgagggtgtgtgttaaaaagccccacattagaaaaaatatggtctaacaatgtgt 3921805  T
Q  132 ttataagtgggggaaattctcacgt-------------tgtaaggatgagttagaccctaatttgaacacacaatttaggggtgaagggagtgatggagt 218  Q
    |||||||||||| |||| |||||||             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  3921806 ttataagtggggaaaatcctcacgtcataagctgattctgtaaggatgagttagaccctaatttgaacacaaaatttaggggtgaagggagtgatggtgt 3921905  T
Q  219 ttgtggctggaagtggtttggtgacggagatttaagggtgatgcgattttgggctgaaggtacttaggggtgaaatcaat 298  Q
    ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3921906 ttgtggctggaagcggtttggcgacggagatttaagggtgatacgattttgggctgaaggtacttaggggtgaaatcaat 3921985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 4868749 - 4868689
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  4868749 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 4868689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 13353348 - 13353408
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  13353348 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 13353408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 33796473 - 33796533
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  33796473 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 33796533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 17147834 - 17147772
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||| |||||||||||||  ||||||||| ||||||||||||| ||||||| |||||||||    
T  17147834 gtcacccaccatttatgtccac--gaaccaagcccaatagtgctggttgtgagggggtgtgttaa 17147772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 6400792 - 6400732
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| | |||||||    
T  6400792 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggggtgttaa 6400732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 12330116 - 12329995
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaaaagccccacattagcaaaaatacagtctaacaatgt 129  Q
    |||||| |||||||||||||  ||||||||| ||||  ||||||||||||||| ||||||| || || |||||||  |  || |||   | |||||||||    
T  12330116 cacccaccatttatgtccac--gaaccaagcccaattatgctggtcgtgagggggtgtgtt-aagagtcccacatcggataagatatgatataacaatgt 12330020  T
Q  130 gtttataagtgggggaaattctcac 154  Q
    ||||||||||||||| ||| |||||    
T  12330019 gtttataagtgggggcaatcctcac 12329995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 33631742 - 33631692
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    |||||| |||||||||||||   ||||||||||||||||||||||||||||||    
T  33631742 cacccaccatttatgtccact--aaccaagctcaatagtgctggtcgtgaggg 33631692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 1788883 - 1788829
Alignment:
Q  26 gtgtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    |||| ||||||||||||||||||   ||||||||||||||||||| || ||||||||    
T  1788883 gtgttacccatcatttatgtccaa--gaaccaagctcaatagtgcaggccgtgaggg 1788829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 6542882 - 6542820
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||| |||||||||||||  ||||||||  |||||  | ||||||||||||||||||||||    
T  6542882 gtcacccaccatttatgtccac--gaaccaagtccaatatcgttggtcgtgagggtgtgtgttaa 6542820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 9705168 - 9705226
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| ||||||||||||    |||||||  ||||||||||||||||||||| |||||||||    
T  9705168 cacccaccatttatgtcca----aaccaagtccaatagtgctggtcgtgagggggtgtgttaa 9705226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 20830659 - 20830721
Alignment:
Q  29 tcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaa 93  Q
    ||||||||||||||| |||||  ||||||||| ||||| | ||||||||||| |||| |||||||    
T  20830659 tcacccatcatttatttccac--gaaccaagcccaataatactggtcgtgagagtgtatgttaaa 20830721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 24270042 - 24269982
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  24270042 cacccaccatttatgtccac--gaaccaagctcaatagtgctggtcgtgagggggtgtgttaa 24269982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 24346673 - 24346613
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  24346673 cacccaccatttatgtccac--gaaccaagctcaatagtgctggtcgtgagggggtgtgttaa 24346613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 95438 - 95378
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  95438 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 95378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 8081286 - 8081226
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  8081286 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 8081226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 24531746 - 24531806
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  24531746 cacccaacatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 24531806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 41666929 - 41666869
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  41666929 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 41666869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 43117794 - 43117844
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  43117794 cacccatcatttatgtccac--gaaccaagctcaatagtgttggtcgtgaggg 43117844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 6919359 - 6919306
Alignment:
Q  37 catttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||||||||  ||||||||| |||||||||||||||||| ||||||||||||    
T  6919359 catttatgtccac--gaaccaagcccaatagtgctggtcgtgatggtgtgtgttaa 6919306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 33337410 - 33337350
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| |||||||||||||| |||||| |||||||||    
T  33337410 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcatgagggggtgtgttaa 33337350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 38731774 - 38731715
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||||||||||||||   ||||||||| ||||||||||||||||||||| |||||||||    
T  38731774 cacccatcatttatgtccat--gaaccaagcccaatagtgctggtcgtgaggg-gtgtgttaa 38731715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 15590092 - 15590145
Alignment:
Q  37 catttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||||||||  ||||||| | ||||||||||||||||||||| |||||||||    
T  15590092 catttatgtccac--gaaccaaacccaatagtgctggtcgtgagggggtgtgttaa 15590145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 18333636 - 18333577
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| || |||||||||||||||||| |||||||||    
T  18333636 cacccaccatttatgtccac--gaaccaagcccattagtgctggtcgtgaggg-gtgtgttaa 18333577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 30770221 - 30770161
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| |||||| |||||| ||||||| |||||||||    
T  30770221 cacccaccatttatgtccac--gaaccaagcccaatagcgctggttgtgagggggtgtgttaa 30770161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 32908891 - 32908830
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||| |||||||||| ||  ||||||| | ||||||||||||||||||||| |||||||||    
T  32908891 gtcacccaccatttatgtcaac--gaaccaaacccaatagtgctggtcgtgaggg-gtgtgttaa 32908830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 6415836 - 6415880
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaa 93  Q
    |||||||||||| |||||||| |||| |||||| |||||||||||    
T  6415836 cacgaaccaagcccaatagtgttggttgtgaggttgtgtgttaaa 6415880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 18885394 - 18885434
Alignment:
Q  52 gaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    ||||||||| ||||||||||||||||||| | |||||||||    
T  18885394 gaaccaagcccaatagtgctggtcgtgagagggtgtgttaa 18885434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 20510807 - 20510754
Alignment:
Q  37 catttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||||||||  ||||||||| |||||||| || ||||||||| |||||||||    
T  20510807 catttatgtccac--gaaccaagcccaatagtgatgatcgtgagggggtgtgttaa 20510754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 13574861 - 13574785
Alignment:
Q  26 gtgtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaaaagccccacat 104  Q
    |||||||||| |||||||||||||  ||||||||| |||||||||| |||||||||| |||||||||| || |||||||    
T  13574861 gtgtcacccaccatttatgtccac--gaaccaagcccaatagtgctagtcgtgagggagtgtgttaaagagtcccacat 13574785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 34992751 - 34992813
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  34992751 gtcacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 34992813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 16239739 - 16239799
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  |||||||||||||||||| |||||||||||| |||||||||    
T  16239739 cacccaccatttatgtccac--gaaccaagctcaatagtgatggtcgtgagggggtgtgttaa 16239799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 31317378 - 31317438
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||| ||||||||||||||||||||||| |||||||||    
T  31317378 cacccaccatttatgtccac--gaaccaaactcaatagtgctggtcgtgagggggtgtgttaa 31317438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 35038366 - 35038306
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||| ||||||||||||| |||||||||    
T  35038366 cacccaccatttatgtccac--gaaccaagcccaatagtactggtcgtgagggggtgtgttaa 35038306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 39683440 - 39683380
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||| |||||||||||||||  ||||||||    
T  39683440 cacccaccatttatgtccac--gaaccaagcccaataatgctggtcgtgagggactgtgttaa 39683380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 4155489 - 4155531
Alignment:
Q  50 acgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    ||||||||||| ||||||||||||||||||| | |||||||||    
T  4155489 acgaaccaagcccaatagtgctggtcgtgagagggtgtgttaa 4155531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 19954389 - 19954339
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    |||||| |||||||||||||  ||||||||| ||||||| |||||||||||||    
T  19954389 cacccaccatttatgtccac--gaaccaagcccaatagtactggtcgtgaggg 19954339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 21808867 - 21808834
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    |||||||||||| |||||||||||||||||||||    
T  21808867 cacgaaccaagcccaatagtgctggtcgtgaggg 21808834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 16419414 - 16419474
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  16419414 cacccaccatttatgtccac--gaaccaagctcaatagtgctggtcgtgagggggtgtgttaa 16419474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 41069253 - 41069315
Alignment:
Q  29 tcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaa 93  Q
    |||| ||||||||||||||||  ||||||||||||||||| ||||||||||||| ||||||||||    
T  41069253 tcactcatcatttatgtccac--gaaccaagctcaatagtactggtcgtgagggagtgtgttaaa 41069315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 2029916 - 2029976
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  2029916 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 2029976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 5711611 - 5711551
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  5711611 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 5711551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 14466347 - 14466287
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  14466347 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 14466287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 19110407 - 19110450
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  19110407 cacgaaccaagctcaatagtgctgatcgtgagagtgtgtgttaa 19110450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 40149156 - 40149118
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgagggtgtgt 87  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  40149156 cacgaaccaagcccaatagtgctggtcgtgagggtgtgt 40149118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 17525271 - 17525209
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaaa 94  Q
    |||||| |||||||||||||  ||||||||| |||||||| |||||||||| | |||||||||||    
T  17525271 cacccaccatttatgtccac--gaaccaagcccaatagtgatggtcgtgagtgggtgtgttaaaa 17525209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 16533459 - 16533519
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||  ||||||||||||||||||| | |||||||||    
T  16533459 cacccaccatttatgtccac--gaaccaaggccaatagtgctggtcgtgagagggtgtgttaa 16533519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 37812423 - 37812380
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||    
T  37812423 cacgaaccaagcccaataatgctggtcgtgagggggtgtgttaa 37812380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 33381127 - 33381076
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagg 81  Q
    |||||||||||||||||||  |||||||||| | || |||||||||||||||||    
T  33381127 gtcacccatcatttatgtc--cacgaaccaaacccagtagtgctggtcgtgagg 33381076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 18607163 - 18607123
Alignment:
Q  50 acgaaccaagctcaatagtgctggtcgtgagggtgtgtgtt 90  Q
    ||||||||||| |||||||||| |||||| |||||||||||    
T  18607163 acgaaccaagcccaatagtgctagtcgtgtgggtgtgtgtt 18607123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 4112943 - 4112883
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  4112943 cacccaccatttatgtccac--gaaccaagctcaatagtgctggtcgtgagggggtgtgttaa 4112883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 369777 - 369839
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||| |||||||||||||  ||||||||| |||||||||||||||||||||  ||||||||    
T  369777 gtcacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgaggggatgtgttaa 369839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 12325462 - 12325408
Alignment:
Q  37 catttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaa 93  Q
    |||||||||||||  ||||||||| |||||||| |||||||||||||||||||||||    
T  12325462 catttatgtccac--gaaccaagcccaatagtgttggtcgtgagggtgtgtgttaaa 12325408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 12376603 - 12376549
Alignment:
Q  37 catttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaa 93  Q
    |||||||||||||  ||||||||| |||||||| |||||||||||||||||||||||    
T  12376603 catttatgtccac--gaaccaagcccaatagtgttggtcgtgagggtgtgtgttaaa 12376549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 25145640 - 25145597
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  25145640 cacgaatcaagctcaatagtgctggtcgtgagggggtgtgttaa 25145597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 34264640 - 34264598
Alignment:
Q  50 acgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    ||||||||||| ||||||||||||||||||||| |||||||||    
T  34264640 acgaaccaagcacaatagtgctggtcgtgagggggtgtgttaa 34264598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 2859564 - 2859514
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    |||||| |||||||||||||  ||||||||| |||||||||||||||||||||    
T  2859564 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgaggg 2859514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 17412479 - 17412541
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaaa 94  Q
    ||||||||||||||||||||  ||| ||||| |||||||| ||||||||| || |||||||||||    
T  17412479 cacccatcatttatgtccac--gaatcaagcccaatagtgttggtcgtgatggggtgtgttaaaa 17412541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 26173543 - 26173499
Alignment:
Q  118 gtctaacaatgtgtttataagtgggggaaattctcacgttgtaag 162  Q
    |||| |||||||||||||||||||||| ||||||||| |||||||    
T  26173543 gtctgacaatgtgtttataagtgggggcaattctcaccttgtaag 26173499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 52961510 - 52961554
Alignment:
Q  48 acacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||    
T  52961510 acacgaaacaagctcaatagtgctagtcgtgagggggtgtgttaa 52961554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 8870861 - 8870801
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||| | |||| |||||||||||||||| |||||||||    
T  8870861 cacccaccatttatgtccac--gaaccaaacccaattgtgctggtcgtgagggggtgtgttaa 8870801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 25713305 - 25713365
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| |||||||| |||||||||||| | |||||||    
T  25713305 cacccaccatttatgtccac--gaaccaagcccaatagtgttggtcgtgagggggggtgttaa 25713365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 39348289 - 39348233
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtg 88  Q
    |||||| |||||||||||||  ||||||||| |||||||||||||||||| || |||||    
T  39348289 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgacggggtgtg 39348233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 51459859 - 51459817
Alignment:
Q  50 acgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    ||||||||||| |||| |||||||||||||||| |||||||||    
T  51459859 acgaaccaagcccaattgtgctggtcgtgagggggtgtgttaa 51459817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 9146709 - 9146676
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    ||||||||||||||||||||||| ||||||||||    
T  9146709 cacgaaccaagctcaatagtgctagtcgtgaggg 9146676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 27413494 - 27413556
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaaa 94  Q
    |||||| |||||||||||||  ||| ||||| |||||||| |||||||||| | |||||||||||    
T  27413494 cacccaccatttatgtccac--gaatcaagcccaatagtgttggtcgtgagagggtgtgttaaaa 27413556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 38668270 - 38668332
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| ||||||||||||||   ||||||||| ||||| ||||||||||||| | |||||||||    
T  38668270 gtcacctatcatttatgtccat--gaaccaagcccaatattgctggtcgtgagtgggtgtgttaa 38668332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 7653404 - 7653448
Alignment:
Q  48 acacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    ||||||||||| | |||||||| |||||||||||| |||||||||    
T  7653404 acacgaaccaaacgcaatagtgttggtcgtgagggagtgtgttaa 7653448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 16163111 - 16163139
Alignment:
Q  64 atagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||||||||||||||||||||||||    
T  16163111 atagtgctggtcgtgagggtgtgtgttaa 16163139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 2061 - 2123
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  2061 gtcacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 2123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 11232368 - 11232306
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  11232368 gtcacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 11232306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 8084273 - 8084334
Alignment:
Q  29 tcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    ||||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  8084273 tcacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 8084334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 3157181 - 3157121
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  3157181 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 3157121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 7669566 - 7669625
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  7669566 cacccaccatttatgtccac--gaaccaagctca-tagtgctggtcgtgagggtgtgtgttaa 7669625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 37868247 - 37868184
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaa 93  Q
    |||||||| |||||||||||||  || |||||| |||||||| |||||||||||||||||||||||    
T  37868247 gtcacccaccatttatgtccac--gagccaagcccaatagtgttggtcgtgagggtgtgtgttaaa 37868184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 35682953 - 35682903
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  35682953 cacccaccatttatgtccac--gaaccaagctcaatagtgctggtcgtgaggg 35682903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 37868005 - 37867944
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaa 93  Q
    |||||| |||||||||||||  ||||||||  |||||||| |||||||||||||||||||||||    
T  37868005 cacccaccatttatgtccac--gaaccaaggccaatagtgttggtcgtgagggtgtgtgttaaa 37867944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 3157496 - 3157436
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||| | |||||||||    
T  3157496 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagtgggtgtgttaa 3157436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 20094732 - 20094672
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| | |||||||    
T  20094732 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggcgtgttaa 20094672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 20301408 - 20301468
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||| ||  ||||||||| ||||||||||||||||||||| |||||||||    
T  20301408 cacccaccatttatgtctac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 20301468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 21088040 - 21088100
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||| ||  ||||||||| ||||||||||||||||||||| |||||||||    
T  21088040 cacccaccatttatgtctac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 21088100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 39052709 - 39052649
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| |||||||| |||||||||||| |||||||||    
T  39052709 cacccaccatttatgtccac--gaaccaagcccaatagtgttggtcgtgagggggtgtgttaa 39052649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 39052866 - 39052806
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| |||||||| |||||||||||| |||||||||    
T  39052866 cacccaccatttatgtccac--gaaccaagcccaatagtgttggtcgtgagggggtgtgttaa 39052806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 10615558 - 10615602
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaa 93  Q
    |||||||||||  |||||||||| |||||||||||||||||||||    
T  10615558 cacgaaccaagtccaatagtgctagtcgtgagggtgtgtgttaaa 10615602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 31079732 - 31079663
Alignment:
Q  33 ccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaaaagccccacat 104  Q
    |||||||||||||||||  ||||||||| |||||| | |||||||||||  |||||||||| || |||||||    
T  31079732 ccatcatttatgtccac--gaaccaagcccaatagggatggtcgtgaggaggtgtgttaaagagtcccacat 31079663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 39960105 - 39960154
Alignment:
Q  31 acccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    ||||| |||||||||||||  ||||||||| |||||||||||||||||||||    
T  39960105 acccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgaggg 39960154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 10615095 - 10615040
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaaaagccccacat 104  Q
    |||||||||||  |||||||| |||| |||||||||||||||||| || |||||||    
T  10615095 cacgaaccaagtccaatagtgttggttgtgagggtgtgtgttaaagagtcccacat 10615040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 41790805 - 41790865
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| ||||||||||||   ||||||||| ||| ||||||||||||||||| |||||||||    
T  41790805 cacccaccatttatgtccat--gaaccaagcccaagagtgctggtcgtgagggggtgtgttaa 41790865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 18004266 - 18004211
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgt 87  Q
    |||||| |||||||||||||  |||||||||  |||||||||||||||||||| ||||    
T  18004266 cacccaccatttatgtccac--gaaccaagcctaatagtgctggtcgtgagggggtgt 18004211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 31197761 - 31197816
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgt 87  Q
    |||||| |||||||||||||  ||||||||||||||||||||| | ||||||| ||||    
T  31197761 cacccaccatttatgtccac--gaaccaagctcaatagtgctgattgtgagggggtgt 31197816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 37868520 - 37868470
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    |||||| |||||||||  ||||||||||||| ||||| |||||||||||||||    
T  37868520 cacccaccatttatgt--acacgaaccaagcccaatattgctggtcgtgaggg 37868470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 6218349 - 6218411
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    ||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||| |||||||||    
T  6218349 gtcacccatcatttatgt--acaagaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 6218411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 52559716 - 52559779
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaaaa 95  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||| ||||||| ||||||||||||    
T  52559716 cacccaccatttatgtccac--gaaccaagcccaatagtgctggttgtgagggggtgtgttaaaaa 52559779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 5398647 - 5398587
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  |||||||||  |||||||||||||||||||| |||||||||    
T  5398647 cacccaccatttatgtccac--gaaccaagccaaatagtgctggtcgtgagggggtgtgttaa 5398587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 28245698 - 28245638
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| |||||||||||||||||| || |||||||||    
T  28245698 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgatggggtgtgttaa 28245638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 35796897 - 35796854
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  35796897 cacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 35796854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 40717378 - 40717318
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| ||||||||||||||  ||||||||  |||||||||||||||||||| |||||||||    
T  40717378 cacccaccatttatgtccaca--aaccaagcctaatagtgctggtcgtgagggggtgtgttaa 40717318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 50543502 - 50543442
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| |||||||| |||||||||||| |||||||||    
T  50543502 cacccaccatttatgtccac--gaaccaagcccaatagtgttggtcgtgagggggtgtgttaa 50543442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 30530079 - 30530038
Alignment:
Q  52 gaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaa 93  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  30530079 gaaccaagctcaatagtgatggttgtgagggtgtgtgttaaa 30530038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 35788807 - 35788857
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    |||||| |||||||||||||  ||||||||| |||||||||||||||||||||    
T  35788807 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgaggg 35788857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 27634236 - 27634193
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||||||| ||||||||||||||||||||| | |||||||    
T  27634236 cacgaaccaagcccaatagtgctggtcgtgagggggggtgttaa 27634193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 35819067 - 35819015
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    |||||||| |||||||||||||  ||||||||| ||||||||||||| |||||||    
T  35819067 gtcacccaccatttatgtccac--gaaccaagcccaatagtgctggttgtgaggg 35819015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 1215984 - 1216035
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagg 81  Q
    |||||||| ||||||||||||   ||||||||||||||| ||||||||||||||    
T  1215984 gtcacccaccatttatgtccaa--gaaccaagctcaataatgctggtcgtgagg 1216035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 43743129 - 43743192
Alignment:
Q  28 gtcacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaaa 93  Q
    ||||| |||||||||||||  |||||||||| | ||||| ||||||| ||||||| ||||||||||    
T  43743129 gtcactcatcatttatgtc--cacgaaccaaacccaataatgctggttgtgagggagtgtgttaaa 43743192  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 12005619 - 12005570
Alignment:
Q  56 caagctcaatagtgctggtcgtga-gggtgtgtgttaaaaagccccacat 104  Q
    ||||| |||||||||||||||||| |||||||||||||| || |||||||    
T  12005619 caagcccaatagtgctggtcgtgaggggtgtgtgttaaagagtcccacat 12005570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 92
Target Start/End: Complemental strand, 36686050 - 36686021
Alignment:
Q  63 aatagtgctggtcgtgagggtgtgtgttaa 92  Q
    ||||||||||||||||||||||||||||||    
T  36686050 aatagtgctggtcgtgagggtgtgtgttaa 36686021  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 400652 - 400616
Alignment:
Q  118 gtctaacaatgtgtttataagtgggggaaattctcac 154  Q
    |||| |||||||||||||||||||||||||| |||||    
T  400652 gtctgacaatgtgtttataagtgggggaaatcctcac 400616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 1596740 - 1596800
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||    
T  1596740 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagagtgtgtgttaa 1596800  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 36277163 - 36277103
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  36277163 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 36277103  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 48243214 - 48243171
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  48243214 cacgaaccaagctcaatagtgctggtcgtgagggggtgtgttaa 48243171  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 3519897 - 3519837
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||| ||||||||||||||| |||||||||    
T  3519897 cacccaccatttatgtccac--gaaccaagcccaataatgctggtcgtgagggggtgtgttaa 3519837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 14540905 - 14540853
Alignment:
Q  38 atttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||||||||||  |||||||| |||||||||||||| ||||||||||||||||    
T  14540905 atttatgtccaca--aaccaagcccaatagtgctggtcatgagggtgtgtgttaa 14540853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 21861441 - 21861501
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  |||||||||  |||||||||||||||||||| |||||||||    
T  21861441 cacccaccatttatgtccac--gaaccaagcctaatagtgctggtcgtgagggggtgtgttaa 21861501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 25620283 - 25620343
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| |||||||| ||||||||| ||||||||||||    
T  25620283 cacccaccatttatgtccac--gaaccaagcccaatagtgttggtcgtgaaggtgtgtgttaa 25620343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 29469752 - 29469812
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||| ||||| ||||||||||||||||||||| |||||||||    
T  29469752 cacccaccatttatgtccac--gaatcaagcccaatagtgctggtcgtgagggggtgtgttaa 29469812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 40746204 - 40746145
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||    
T  40746204 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgaggg-gtgtgttaa 40746145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 3519976 - 3519926
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    |||||| |||||||||||||  ||||||||| |||||||||||||||||||||    
T  3519976 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgaggg 3519926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 2315198 - 2315138
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| |||||||| |||||||||||| |||| ||||    
T  2315198 cacccaccatttatgtccac--gaaccaagcccaatagtgttggtcgtgagggggtgtattaa 2315138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 5871730 - 5871691
Alignment:
Q  50 acgaaccaagctcaatagtgctggtcgtgagggtgtgtgt 89  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  5871730 acgaaccaaactcaatagtgctggtcgtgagggggtgtgt 5871691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 31892299 - 31892359
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| ||||| || |||||||||||| |||||||||    
T  31892299 cacccaccatttatgtccac--gaaccaagcccaataatgatggtcgtgagggggtgtgttaa 31892359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 33996251 - 33996191
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| |||||||| || ||||||||||||| |||||    
T  33996251 cacccaccatttatgtccac--gaaccaagcccaatagtgttgatcgtgagggtgtgagttaa 33996191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 40898887 - 40898827
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  |||||||||||||||||| |||  |||| ||||||||||||    
T  40898887 cacccaccatttatgtccac--gaaccaagctcaatagtgttggctgtgacggtgtgtgttaa 40898827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 3038171 - 3038133
Alignment:
Q  118 gtctaacaatgtgtttataagtgggggaaattctcacgt 156  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  3038171 gtctaacaatgtgtttataagtgggggcaatcctcacgt 3038133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 4886476 - 4886526
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgaggg 82  Q
    |||||| |||||||||||||  ||||||||| ||||||| |||||||||||||    
T  4886476 cacccaccatttatgtccac--gaaccaagcccaatagtactggtcgtgaggg 4886526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 23839164 - 23839128
Alignment:
Q  118 gtctaacaatgtgtttataagtgggggaaattctcac 154  Q
    |||||||||| |||||||||||||||||||| |||||    
T  23839164 gtctaacaatctgtttataagtgggggaaatcctcac 23839128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 48661492 - 48661431
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctgg-tcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  ||||||||| |||||||| ||| ||||||||| |||||||||    
T  48661492 cacccaccatttatgtccac--gaaccaagcccaatagtgttggttcgtgagggggtgtgttaa 48661431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 5691 - 5633
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgtt 90  Q
    |||||| |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||    
T  5691 cacccaccatttatgtccac--gaaccaagcccaatagtgctggtcgtgagggggtgtgtt 5633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 82008 - 82048
Alignment:
Q  52 gaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  82008 gaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 82048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 12811 - 12853
Alignment:
Q  49 cacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  12811 cacgaaccaagctcaatagtgctgg-cgtgagggggtgtgttaa 12853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 67397 - 67457
Alignment:
Q  30 cacccatcatttatgtccacacgaaccaagctcaatagtgctggtcgtgagggtgtgtgttaa 92  Q
    |||||| |||||||||||||  |||||||||||||||||| |||  |||| ||||||||||||    
T  67397 cacccaccatttatgtccac--gaaccaagctcaatagtgttggctgtgacggtgtgtgttaa 67457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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