View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12517_low_10 (Length: 240)
Name: NF12517_low_10
Description: NF12517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12517_low_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 46429799 - 46430028
Alignment:
| Q |
18 |
gatcaaacaaattacaatggaactctgattgaacattaagaagatgacactaaacaacttattattaccttcaactgttcataaacttcatatgcttgtt |
117 |
Q |
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| T |
46429799 |
gatcaaacaaattacaatggaactctgattgaacattaagaagatgacactaaacaacttattattaccttcaactgttcataaacttcatatgcttgtt |
46429898 |
T |
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| Q |
118 |
tttctcattttccttagaccaaacaatcaactgaggaaaattctcatctacaagttattttgcac-------nnnnnnnttctcattctcaggatcacat |
210 |
Q |
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| T |
46429899 |
tttctcattttccttagaccaaacaatcaactgaggaaaattctcatctacaagttattttgcacaaaaaatattctcattctcattctcaggatcacat |
46429998 |
T |
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| Q |
211 |
gtaaacgaatagcggagtctcttctgtacc |
240 |
Q |
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| T |
46429999 |
gtaaacgaatagcggagtctcttctgtacc |
46430028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 151
Target Start/End: Original strand, 46434651 - 46434745
Alignment:
| Q |
49 |
aacattaagaagatgacactaaacaacttattattaccttcaactgttcataaacttcatatgcttgtttttctcattttccttagaccaaacaatcaac |
148 |
Q |
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| T |
46434651 |
aacattaagaagat-acactaaactacttattagtaccttcaactg-tcata------atatgcttgtttttcttatttttcctcgacaaagcaatcaac |
46434742 |
T |
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