View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12517_low_2 (Length: 418)

Name: NF12517_low_2
Description: NF12517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12517_low_2
NF12517_low_2
[»] chr4 (17 HSPs)
chr4 (18-221)||(35241357-35241560)
chr4 (21-263)||(35283625-35283846)
chr4 (18-220)||(35278148-35278351)
chr4 (266-405)||(35283445-35283584)
chr4 (270-405)||(35277934-35278069)
chr4 (20-214)||(35287195-35287391)
chr4 (23-179)||(35253630-35253786)
chr4 (266-400)||(35241152-35241286)
chr4 (271-391)||(35271266-35271386)
chr4 (25-218)||(35271467-35271666)
chr4 (294-390)||(35275295-35275391)
chr4 (27-104)||(35238385-35238462)
chr4 (163-220)||(35275487-35275544)
chr4 (26-106)||(35247083-35247163)
chr4 (295-389)||(35286991-35287085)
chr4 (266-315)||(35253480-35253529)
chr4 (25-78)||(35275605-35275658)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 35241560 - 35241357
Alignment:
Q  18 tcatctaccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtga 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  35241560 tcatctaccatcttagaagttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcaaaaaaagtga 35241461  T
Q  118 gtctctttcttttcatatccccttctactcactcttctgcattagtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  35241460 gtctctttcttttcatatccccttctactcactcttctgcattagtccttccattgtaacttgaggattgattcattatgttttgatgtttcatgatata 35241361  T
Q  218 tata 221  Q
    ||||    
T  35241360 tata 35241357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 21 - 263
Target Start/End: Complemental strand, 35283846 - 35283625
Alignment:
Q  21 tctaccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtgagtc 120  Q
    ||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  35283846 tctaccatctttgacgtgagatttcaaccaggatcaactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcaaaaaaagtgagtc 35283747  T
Q  121 tctttcttttcatatccccttctactcactcttctgcattagtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatatatat 220  Q
    ||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  35283746 tctttctt-------------ctactcactcttctgcattagtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatat---- 35283664  T
Q  221 atgtatatgtattgctcgagagagtgttgtgcaatgttgttgg 263  Q
        |||||||||||||||||||||||||||||||||||||||    
T  35283663 ----atatgtattgctcgagagagtgttgtgcaatgttgttgg 35283625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 35278351 - 35278148
Alignment:
Q  18 tcatctaccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtga 117  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||       ||||    
T  35278351 tcatctaccatcttagatgttagatttcaaccaggatccactatatttgcaacatcttctgctgataaaacaataaaattctgggatgctaaaacggtga 35278252  T
Q  118 gtctctttcttttcatatccccttctactcactcttctgcattagtccttcc-tttgtaacttgatgattggttcattatgttttgatgtttcatgatat 216  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||||  ||| || ||||||||||||||||||||     
T  35278251 gtctctttcttttcataccccattctactcactctgctgcattagtccttccttttgtaacttgatgattaattcgttgtgttttgatgtttcatgatac 35278152  T
Q  217 atat 220  Q
    ||||    
T  35278151 atat 35278148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 266 - 405
Target Start/End: Complemental strand, 35283584 - 35283445
Alignment:
Q  266 ggaggaattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcg 365  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35283584 ggaggaattctttgctcgtccgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagttttacactcg 35283485  T
Q  366 tcttttagtattcaaaactgaataacaactactcacaggt 405  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35283484 tcttttagtattcaaaactgaataacaactactcacaggt 35283445  T

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Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 270 - 405
Target Start/End: Complemental strand, 35278069 - 35277934
Alignment:
Q  270 gaattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtctt 369  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||    
T  35278069 gaattctttgctcgtctgatacctgtgatttaattaaagtatgggatctcaatcagcgtgtcataatgaagacctttatggtgagtcctacactcgtctt 35277970  T
Q  370 ttagtattcaaaactgaataacaactactcacaggt 405  Q
    ||||||||||||||||||||||||||||||||||||    
T  35277969 ttagtattcaaaactgaataacaactactcacaggt 35277934  T

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Target: chr4; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 35287391 - 35287195
Alignment:
Q  20 atctaccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtgagt 119  Q
    |||||| ||||| |||||||||||| ||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||       ||||||    
T  35287391 atctactatcttcgatgttagatttaaaccaggttcaactatatttgcaacatcctctgctgataaaacagtaaaattatgggatgcaaaaaaagtgagt 35287292  T
Q  120 ctctttc-ttttcatat-ccccttctactcactcttctgcattagtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgat 214  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||||| ||| |||||||||||    
T  35287291 ctctttctttttcacatcccccttctactcactcttctgcattagtccttcctttgtaacttgaggattgatgccttatgtcttgctgtttcatgat 35287195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 35253786 - 35253630
Alignment:
Q  23 taccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnngtgagtctc 122  Q
    ||||||||| || |||||||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||       |||||||||    
T  35253786 taccatcttcgaagttagatttcaaccaggatcaactgtgtttgcaacctcttctgctgataaaacagtaaaattatgggatgcaaacagtgtgagtctc 35253687  T
Q  123 tttcttttcatatccccttctactcactcttctgcattagtccttcctttgtaactt 179  Q
    |||||||||| ||| |||||||||||||| ||||||||| |||||||| ||||||||    
T  35253686 tttcttttcacatctccttctactcactcatctgcattattccttcctatgtaactt 35253630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 266 - 400
Target Start/End: Complemental strand, 35241286 - 35241152
Alignment:
Q  266 ggaggaattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcg 365  Q
    ||||||| | |||||||||| |||||| || ||||||||||||||||||| |||||||||||||||| ||| ||  ||| ||| |||||||||||||||     
T  35241286 ggaggaactctttgctcgtccgataccagtaatgtaattaaagtatgggatctcaatcagcgtgtcaggattaaccactgtattgtgagtcttacactca 35241187  T
Q  366 tcttttagtattcaaaactgaataacaactactca 400  Q
    ||||||||||||||||||||||| |||||||||||    
T  35241186 tcttttagtattcaaaactgaatgacaactactca 35241152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 271 - 391
Target Start/End: Complemental strand, 35271386 - 35271266
Alignment:
Q  271 aattatttgctcgtctgatacctgtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtcttt 370  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||| ||| | ||| |||||| ||| || |||||||  |||||||| |||||| | |||    
T  35271386 aattctttgctcgtctgatacatgtgatgcaattaaagtatgggatctcgaacagtgtgtcacgattaacaactttacagtgagtctaacactcatattt 35271287  T
Q  371 tagtattcaaaactgaataac 391  Q
    |||||||||||||||||||||    
T  35271286 tagtattcaaaactgaataac 35271266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 35271666 - 35271467
Alignment:
Q  25 ccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgcnnnnnnn------gtgag 118  Q
    |||||||||| || ||||||| | |||||||  ||||||||||||| ||||||||||||| |||||||||| ||||| | ||             || ||    
T  35271666 ccatcttagaagtcagatttcgatcaggatcacctatatttgcaacttcttctgctgatagaacagtaaaactatggcacgcaaaaagaacaagagtaag 35271567  T
Q  119 tctctttcttttcatatccccttctactcactcttctgcattagtccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatatat 218  Q
    | ||||||||||| || | ||||||||||||||||||||| ||||| |||||||||||||    ||||  ||||||||||||||||||||||||||||||    
T  35271566 tttctttcttttcttagctccttctactcactcttctgcaatagtctttcctttgtaactcatggattaattcattatgttttgatgtttcatgatatat 35271467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 294 - 390
Target Start/End: Complemental strand, 35275391 - 35275295
Alignment:
Q  294 gtgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtcttttagtattcaaaactgaataa 390  Q
    |||||| ||||||| ||||||| |||||||||||||||||||| |  ||| ||| ||||||||| |||||  | |||||||||||||||||||||||    
T  35275391 gtgatgcaattaaattatgggatctcaatcagcgtgtcatgattagcaacattaaggtgagtctgacacttatattttagtattcaaaactgaataa 35275295  T

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Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 35238462 - 35238385
Alignment:
Q  27 atcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggat 104  Q
    |||| ||| |||||||||||||||||| | | |||||||||||| |||||  |||||||| |||||||||||||||||    
T  35238462 atctcagaagttagatttcaaccaggaacaaatatatttgcaacttcttcctctgataaagcagtaaaattatgggat 35238385  T

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Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 35275544 - 35275487
Alignment:
Q  163 tccttcctttgtaacttgatgattggttcattatgttttgatgtttcatgatatatat 220  Q
    ||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||    
T  35275544 tccttcctttgtaacttgaggattaattcattatgttttgatgtttcatcatatatat 35275487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 35247163 - 35247083
Alignment:
Q  26 catcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctgctgataaaacagtaaaattatgggatgc 106  Q
    ||||||||| |||||||||||||||  ||| |||| |||||||||| |||||  ||||  |||||||||| ||||||||||    
T  35247163 catcttagaagttagatttcaaccaaaatcaactagatttgcaacaacttctcgtgatggaacagtaaaactatgggatgc 35247083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 35287085 - 35286991
Alignment:
Q  295 tgatgtaattaaagtatgggacctcaatcagcgtgtcatgatgaagaactttatggtgagtcttacactcgtcttttagtattcaaaactgaata 389  Q
    ||||| |||| |||||||||| ||||||| | || | | ||| || |||| || |||||||||||||||| |||||| ||||||||||| |||||    
T  35287085 tgatggaattcaagtatgggatctcaatcggtgtattaagattaaaaactgtaaggtgagtcttacactcctctttttgtattcaaaacagaata 35286991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 35253529 - 35253480
Alignment:
Q  266 ggaggaattatttgctcgtctgatacctgtgatgtaattaaagtatggga 315  Q
    |||||| || ||||| |||| |||||||||||||||||||||||||||||    
T  35253529 ggaggagttctttgcacgtccgatacctgtgatgtaattaaagtatggga 35253480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 35275658 - 35275605
Alignment:
Q  25 ccatcttagatgttagatttcaaccaggatcgactatatttgcaacatcttctg 78  Q
    ||||||||||  ||||||||||||||| |||  ||||||||||||| |||||||    
T  35275658 ccatcttagaatttagatttcaaccagcatcacctatatttgcaacttcttctg 35275605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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