View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12517_low_3 (Length: 399)
Name: NF12517_low_3
Description: NF12517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12517_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 384
Target Start/End: Complemental strand, 39680426 - 39680058
Alignment:
| Q |
16 |
cttcgaattcatgatcatccacatcgttcagccaatgttcaacatcccatccaaatttcccaccttcaatctctcccattttcaaccaatcatcaacatt |
115 |
Q |
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| T |
39680426 |
cttcgaattcatgatcatccacatcattcagccaatgttcaacatcccatccaaatttcccaccttcaatctctcccattttcaaccaatcatcaacatt |
39680327 |
T |
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| Q |
116 |
ttcaattcttgcatcacaatcaagcaacttaggaacacggtgtgttaaactcatagccataggtaacttactttgtggaccctctacatcatcaccacca |
215 |
Q |
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| T |
39680326 |
ttcaattcttgcatcacaatcaagcaacttaggaacacggtgtgttaaactcatagccataggtaacttactctgtggaccctctacatcatcaccacca |
39680227 |
T |
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| Q |
216 |
acatcaaaaacaaacttccttttctcgcttctgttattactactactgctactactaccgccagagctttcaccttcctctgaaatagtcaatttatggc |
315 |
Q |
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| T |
39680226 |
acatcaaaaacaaactttcttttctcgcttctgttattactactactgctactactaccgccagagctttcaccttcctctgaaatagtcaatttatggc |
39680127 |
T |
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| Q |
316 |
atttatcagtaactccaagcaaagcttcttcttgattcataactttagaccaagtagcactatctcttg |
384 |
Q |
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| T |
39680126 |
atttatcagtaactccaagcaaagcttcttcttgattcataactttagaccaagtagcactatctcttg |
39680058 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 38052656 - 38052608
Alignment:
| Q |
332 |
aagcaaagcttcttcttgattcataactttagaccaagtagcactatct |
380 |
Q |
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| T |
38052656 |
aagcaaagcttgttcttggttcattactttggaccaagttgcactatct |
38052608 |
T |
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