View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12517_low_8 (Length: 263)
Name: NF12517_low_8
Description: NF12517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12517_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 31575554 - 31575794
Alignment:
| Q |
1 |
ggttttgaagctcaatacaacgaataccaaagctgtatgccagaaccattatttgacaggttacaattatttcattttggcaattattgaactaacaatt |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
31575554 |
ggttttgaaactcaaaacaacgaataccaaagctgtatgccagaaccattatttgacaggttacaattatttaattttggaaattattgaactaacaatt |
31575653 |
T |
|
| Q |
101 |
taatttaaagatagaacaattaatttgacacagtgatagaatgtgtctcatacgaatcagatgaaggtatatgcggaacttgtagtggtgacctttctgg |
200 |
Q |
| |
|
||||| |||||||||||||||||||||| | ||| ||||||| ||||||||||||||| ||||||| ||||||||| | |||||| |||| |||||| || |
|
|
| T |
31575654 |
taattcaaagatagaacaattaatttgatagagtaatagaatttgtctcatacgaatcggatgaagatatatgcggcatttgtagcggtgtcctttcagg |
31575753 |
T |
|
| Q |
201 |
agaaaataagatgggatttggaggatatgacaccgatgaaa |
241 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
31575754 |
agaaaataagacaggctttggaggatatgacaccgaggaaa |
31575794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 31584992 - 31585204
Alignment:
| Q |
28 |
caaagctgtatgccagaaccattatttgacaggttacaattatttcattttggcaattattgaactaacaatttaatttaaagatagaacaattaatttg |
127 |
Q |
| |
|
||||| ||||||||||| ||| | ||||||| ||||||||||||||||||||| | || |||||||| ||||| ||||| |||| || || ||| |||| |
|
|
| T |
31584992 |
caaaggtgtatgccagacccagt-tttgacaagttacaattatttcattttggtacctactgaactaataatttgatttagagatggaccatttagtttg |
31585090 |
T |
|
| Q |
128 |
acacagtgatagaatgtgtctcatacgaatcagatgaaggtatatgcggaacttgtagtggtgacctttctggagaaaataagatgggatttggaggata |
227 |
Q |
| |
|
| | || || |||| |||||||| | | || | ||||| |||||| | | ||||| ||||| |||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
31585091 |
atattgtaattgaatttgtctcatcccagtcggttgaagatatatgtgacatttgtactggtggcctttcaagagaaaataagacgggctttggaggata |
31585190 |
T |
|
| Q |
228 |
tgacaccgatgaaa |
241 |
Q |
| |
|
|| ||| ||||||| |
|
|
| T |
31585191 |
tggcactgatgaaa |
31585204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 31607911 - 31608052
Alignment:
| Q |
98 |
atttaatttaaagatagaacaattaatttgacacagtgatagaatgtgtctcatacgaatcagatgaaggtatatgcggaacttgtagtggtgacctttc |
197 |
Q |
| |
|
|||| ||||| |||||||||| ||| |||||||| || | |||| ||||||||| |||||||||||| |||| | | ||||||||||| |||||| |
|
|
| T |
31607911 |
atttgatttatagatagaacagttattttgacactgtaactgaatttgtctcatataaatcagatgaagacatatatgacaattgtagtggtggcctttc |
31608010 |
T |
|
| Q |
198 |
tggagaaaataagatgggatttggaggatatgacaccgatga |
239 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
31608011 |
cggagaaaataagaccggctttggaggatatgacactgatga |
31608052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 31614275 - 31614338
Alignment:
| Q |
178 |
acttgtagtggtgacctttctggagaaaataagatgggatttggaggatatgacaccgatgaaa |
241 |
Q |
| |
|
||||||||||||| ||||| ||| ||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31614275 |
acttgtagtggtggcctttatggtgaatgtaagaagggatttggaggatatgacaccgatgaaa |
31614338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 31439498 - 31439462
Alignment:
| Q |
191 |
acctttctggagaaaataagatgggatttggaggata |
227 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
31439498 |
acctttctggagaaaataagacgggctttggaggata |
31439462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University