View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12517_low_9 (Length: 245)
Name: NF12517_low_9
Description: NF12517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12517_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 54786804 - 54786589
Alignment:
| Q |
19 |
cttatcaaaaccaaaatctatttacaaaaaagagaattcacttcagttaataataaataaattatttgcaatgatattaatcaacatgtgtcaggaagga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54786804 |
cttatcaaaaccaaaatctatttacaaaaaagagaattcacttcagttaataataaataaat-atttgcaatgatattaatcaacatgtgtcaggaagga |
54786706 |
T |
|
| Q |
119 |
acgaacttacatagccaatcaccctgataaaagtgctcattacttgcccaatttgtgaagttaatttttggatcccaagtataccttccacctccaaccc |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54786705 |
acgaacttacatagccaatcaccctggtaaaagtgctcattacttgcccaatttgtgaagttaatttttggatcccaagtataccttccacctccaaccc |
54786606 |
T |
|
| Q |
219 |
tgtgcaacacaggttct |
235 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
54786605 |
tgtgcaacacaggttct |
54786589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University