View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12518_high_10 (Length: 358)

Name: NF12518_high_10
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12518_high_10
NF12518_high_10
[»] chr3 (5 HSPs)
chr3 (7-344)||(9711172-9711508)
chr3 (171-247)||(3414398-3414474)
chr3 (157-241)||(14166728-14166812)
chr3 (186-249)||(3385732-3385795)
chr3 (153-247)||(18540157-18540251)
[»] chr8 (3 HSPs)
chr8 (155-247)||(4861221-4861313)
chr8 (136-247)||(42144659-42144770)
chr8 (142-204)||(17288877-17288939)
[»] chr4 (4 HSPs)
chr4 (141-247)||(15702782-15702888)
chr4 (141-247)||(15709931-15710037)
chr4 (81-247)||(13885844-13886013)
chr4 (136-204)||(18874255-18874323)
[»] chr6 (2 HSPs)
chr6 (180-247)||(32184558-32184625)
chr6 (141-218)||(22461260-22461337)
[»] chr1 (1 HSPs)
chr1 (136-247)||(41138852-41138963)
[»] chr7 (1 HSPs)
chr7 (161-247)||(11510526-11510612)
[»] chr2 (4 HSPs)
chr2 (136-228)||(22384881-22384973)
chr2 (171-228)||(16933680-16933737)
chr2 (62-139)||(24534290-24534366)
chr2 (171-228)||(34891608-34891665)
[»] scaffold0498 (1 HSPs)
scaffold0498 (179-240)||(5108-5169)
[»] scaffold0103 (1 HSPs)
scaffold0103 (171-228)||(16539-16596)
[»] scaffold0024 (1 HSPs)
scaffold0024 (94-204)||(108445-108557)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 9711508 - 9711172
Alignment:
Q  7 ttaaaatcattccagtgtcacacaaatttatgcatttaatctaaacttgattttaaatttagttttgatgttgaaaactatgatgcaatgtgtactttga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  9711508 ttaaaatcattccagtgtcacacaaatttatgcatttaatctaaaattcattttaactttagttttgatgttgaaaactatgatgcgatgtgtactttga 9711409  T
Q  107 tgtttttgaaaactactttgctgcggcgtttttaaatttgaatgaggtacttttaaattgatggagatgggtgacacccttgcatgcttaattaattacc 206  Q
    |||||| |||||||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| |    
T  9711408 tgtttt-gaaaactattttactgcgacgtttttaaatttgaatgaagtacttttaaattgatggagatgggagacatccttgcatgcttaattaattatc 9711310  T
Q  207 gtattttaattataaaataatacgtgaggtttaggttgttatacgcccaat-gaaccaattccataaacggtcgggaatggttttcatatactcctcttc 305  Q
    ||||||||||||||||||||||  || ||||||||||||||||| ||||||  |||| |||||||| ||||||||||||||||||||||||||| |||||    
T  9711309 gtattttaattataaaataatatatggggtttaggttgttatacacccaatcaaaccgattccatacacggtcgggaatggttttcatatactcatcttc 9711210  T
Q  306 aggttttgaaattctgatctgaaatcgacagaatccgtc 344  Q
     |||||||||||| ||| ||||||||||| ||| |||||    
T  9711209 -ggttttgaaattttgacctgaaatcgaccgaacccgtc 9711172  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 3414398 - 3414474
Alignment:
Q  171 agatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgaggtttaggttgtta 247  Q
    ||||| |||||||||||||||| |||||||||||  |||||||||||| ||||||||| ||| |||||||| |||||    
T  3414398 agatgtgtgacacccttgcatgtttaattaattattgtattttaattagaaaataataagtggggtttagggtgtta 3414474  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 14166728 - 14166812
Alignment:
Q  157 ttttaaattgatggagatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgaggtttagg 241  Q
    ||||||||||| | || || ||||||| |||||||| |||||||||||  ||||||| |||| ||||||||| ||||||||||||    
T  14166728 ttttaaattgaagaagctgtgtgacactcttgcatgtttaattaattattgtatttttattagaaaataatatgtgaggtttagg 14166812  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 3385732 - 3385795
Alignment:
Q  186 ttgcatgcttaattaattaccgtattttaattataaaataatacgtgaggtttaggttgttata 249  Q
    ||||||| |||||||||||  ||| |||||||| ||||||||| ||| |||||||| |||||||    
T  3385732 ttgcatgtttaattaattattgtactttaattagaaaataataagtggggtttaggatgttata 3385795  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 18540157 - 18540251
Alignment:
Q  153 gtacttttaaattgatggagatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgaggtttaggttgtta 247  Q
    |||||||| ||| |||||||||| ||||||||||||| || || | || |||   |||||| |||| ||||||||| ||| |||||||| |||||    
T  18540157 gtacttttgaatggatggagatgtgtgacacccttgcgtgatttaatatttattatatttttattagaaaataatatgtggggtttaggatgtta 18540251  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 4861221 - 4861313
Alignment:
Q  155 acttttaaattgatggagatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgaggtttaggttgtta 247  Q
    |||||| |||||| | ||||| |||||||||||||||| |||||||||||  ||||||| |||| ||||||||| ||| |||||||| |||||    
T  4861221 acttttgaattgaagaagatgtgtgacacccttgcatgtttaattaattattgtatttttattagaaaataatatgtggggtttagggtgtta 4861313  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 247
Target Start/End: Complemental strand, 42144770 - 42144659
Alignment:
Q  136 ttttaaatttgaatgaggtacttttaaattgatggagatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgagg 235  Q
    |||| ||||| ||||| |||||||| |||||| |  |||| |||||||||||||  |||| | |||||| | |||||| |||||||||||||| ||| ||    
T  42144770 tttttaatttaaatgaagtacttttgaattgaggatgatgtgtgacacccttgcgcgctttaataattatcatatttttattataaaataatatgtgggg 42144671  T
Q  236 tttaggttgtta 247  Q
     ||||| |||||    
T  42144670 attagggtgtta 42144659  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 17288939 - 17288877
Alignment:
Q  142 atttgaatgaggtacttttaaattgatggagatgggtgacacccttgcatgcttaattaatta 204  Q
    |||| ||||| ||| ||||||||||| | ||||| |||||| ||||||||| |||||||||||    
T  17288939 atttaaatgaagtatttttaaattgaagaagatgtgtgacatccttgcatgtttaattaatta 17288877  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 15702888 - 15702782
Alignment:
Q  141 aatttgaatgaggtacttttaaattgatggagatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgaggtttag 240  Q
    ||||| ||||| ||| |||  |||||| | ||||| |||||||||||||||| |||||||||||  ||| ||| |||| ||||||||| |||||||||||    
T  15702888 aatttaaatgaagtattttcgaattgaagaagatgtgtgacacccttgcatgtttaattaattattgtacttttattagaaaataatatgtgaggtttag 15702789  T
Q  241 gttgtta 247  Q
    | |||||    
T  15702788 ggtgtta 15702782  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 15710037 - 15709931
Alignment:
Q  141 aatttgaatgaggtacttttaaattgatggagatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgaggtttag 240  Q
    ||||| ||||| ||| |||| |||||| | ||||| |||||||||||||||| |||||||||||  ||| ||| |||| ||||||||| ||| |||||||    
T  15710037 aatttaaatgaagtatttttgaattgaagaagatgtgtgacacccttgcatgtttaattaattattgtacttttattagaaaataatatgtggggtttag 15709938  T
Q  241 gttgtta 247  Q
    | |||||    
T  15709937 ggtgtta 15709931  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 13885844 - 13886013
Alignment:
Q  81 aaactatgatgcaatgtgtactttgatgtttttgaaaactactttgctgcggcgttttt---aaatttgaatgaggtacttttaaattgatggagatggg 177  Q
    |||||||||||  |||| |||||| | ||||||||||| || |  |||||| |||||||   |||| | ||| | |||||||| |||||||| ||||| |    
T  13885844 aaactatgatgagatgtatactttaaagtttttgaaaattattccgctgcgacgtttttttaaaatctaaataaagtacttttgaattgatgaagatgtg 13885943  T
Q  178 tgacacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgaggtttaggttgtta 247  Q
    |||||||||| | | ||| | ||||||   |||||| |||| ||||||||| ||| |||||||| |||||    
T  13885944 tgacacccttacgtactttaataattattatatttttattagaaaataatatgtggggtttagggtgtta 13886013  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 18874323 - 18874255
Alignment:
Q  136 ttttaaatttgaatgaggtacttttaaattgatggagatgggtgacacccttgcatgcttaattaatta 204  Q
    |||| ||||| ||| ||| |||||| | || || |||||| ||||||||||||||||||||||||||||    
T  18874323 tttttaatttaaataaggcacttttgattttatagagatgtgtgacacccttgcatgcttaattaatta 18874255  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 32184625 - 32184558
Alignment:
Q  180 acacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgaggtttaggttgtta 247  Q
    ||||| ||||||| |||||||||||| ||||||| |||| ||||||||| ||| |||||||| |||||    
T  32184625 acacctttgcatgtttaattaattactgtatttttattagaaaataataagtggggtttagggtgtta 32184558  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 22461337 - 22461260
Alignment:
Q  141 aatttgaatgaggtacttttaaattgatggagatgggtgacacccttgcatgcttaattaattaccgtattttaatta 218  Q
    ||||| ||||| ||| |||| |||||| | ||||| |||||||||||| ||| |||||||||||  ||||||| ||||    
T  22461337 aatttaaatgaagtattttttaattgaagaagatgtgtgacacccttgaatgtttaattaattattgtattttcatta 22461260  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 41138852 - 41138963
Alignment:
Q  136 ttttaaatttgaatgaggtacttttaaattgatggagatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgagg 235  Q
    |||| ||||| ||||| ||| |||| |||||| | ||||| ||||||||| |||||| |||||| |||   ||||||| ||||||||||||||  || ||    
T  41138852 tttttaatttaaatgaagtatttttgaattgaagaagatgtgtgacacccatgcatgtttaattcattcttgtatttttattataaaataatatatgggg 41138951  T
Q  236 tttaggttgtta 247  Q
    |||||| |||||    
T  41138952 tttagggtgtta 41138963  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 11510526 - 11510612
Alignment:
Q  161 aaattgatggagatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgaggtttaggttgtta 247  Q
    ||||||| | ||||| |||||||||||| ||| |||||||||||  ||| ||| |||| ||||||||| ||| |||||||| |||||    
T  11510526 aaattgaagaagatgtgtgacacccttgtatgtttaattaattattgtacttttattagaaaataatatgtggggtttagggtgtta 11510612  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 22384973 - 22384881
Alignment:
Q  136 ttttaaatttgaatgaggtacttttaaattgatggagatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataata 228  Q
    |||| ||||| ||||| ||| |||| ||||||   ||||| || ||||||||||||| |||||||||||  ||||||| |||| |||||||||    
T  22384973 tttttaatttaaatgaagtattttttaattgaataagatgtgttacacccttgcatgtttaattaattattgtatttttattagaaaataata 22384881  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 16933680 - 16933737
Alignment:
Q  171 agatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataata 228  Q
    ||||| |||||||||||| ||| |||||||||||  ||||||| |||| |||||||||    
T  16933680 agatgtgtgacacccttgtatgtttaattaattattgtatttttattagaaaataata 16933737  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 24534366 - 24534290
Alignment:
Q  62 aatttagttttgatgttgaaaactatgatgcaatgtgtactttgatgtttttgaaaactactttgctgcggcgttttt 139  Q
    |||| |||||||||||| ||||||||||||  || |||||||| | |||||||||||||| | |||| || |||||||    
T  24534366 aattcagttttgatgtt-aaaactatgatgagatatgtactttaaagtttttgaaaactattctgctacgacgttttt 24534290  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 34891665 - 34891608
Alignment:
Q  171 agatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataata 228  Q
    ||||| |||||||||||||||| ||||||  |||  ||||||| ||||||||||||||    
T  34891665 agatgtgtgacacccttgcatgtttaattttttaatgtatttttattataaaataata 34891608  T

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Target: scaffold0498 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 5169 - 5108
Alignment:
Q  179 gacacccttgcatgcttaattaattaccgtattttaattataaaataatacgtgaggtttag 240  Q
    |||||||||||||| |||||||||||  ||||||| ||||  |||||||| ||| |||||||    
T  5169 gacacccttgcatgtttaattaattattgtatttttattagtaaataatatgtggggtttag 5108  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 16596 - 16539
Alignment:
Q  171 agatgggtgacacccttgcatgcttaattaattaccgtattttaattataaaataata 228  Q
    ||||| |||||||||||| ||| |||||||||||  ||||||| |||| |||||||||    
T  16596 agatgtgtgacacccttgtatgtttaattaattattgtatttttattagaaaataata 16539  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 108557 - 108445
Alignment:
Q  94 atgtgtactttgatgtttttgaaaactactttgctgcggcg--tttttaaatttgaatgaggtacttttaaattgatggagatgggtgacacccttgcat 191  Q
    |||| |||||| | |||||||||||||| | |  |||| ||  ||||||||| | ||| | |||||||| |||||||| ||||| ||||||||||||| |    
T  108557 atgtatactttaaagtttttgaaaactattctattgcgacgtttttttaaatctaaataaagtacttttgaattgatgaagatgtgtgacacccttgcgt 108458  T
Q  192 gcttaattaatta 204  Q
    |||| | ||||||    
T  108457 gctttaataatta 108445  T

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